Analysis of interatomic Contacts of Structural Units in PDB entry:
2P88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P88 entry

There are 8 chains in PDB entry 2P88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 369
B
 MET 1ARG 369
C
 MET 1ARG 369
D
 MET 1ARG 369
E
 MET 1ARG 369
F
 MET 1ARG 369
G
 MET 1ARG 369
H
 MET 1ARG 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 2P88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 56Right-handed alpha
Helix 2
2
A
58 69Right-handed alpha
Helix 3
3
A
69 75Right-handed alpha
Helix 4
4
A
81 93Right-handed alpha
Helix 5
5
A
96 115Right-handed alpha
Helix 6
6
A
118 123Right-handed 310
Helix 7
7
A
141 154Right-handed alpha
Helix 8
8
A
167 183Right-handed alpha
Helix 9
9
A
198 208Right-handed alpha
Helix 10
10
A
225 235Right-handed alpha
Helix 11
11
A
248 259Right-handed alpha
Helix 12
12
A
267 272Right-handed alpha
Helix 13
13
A
273 287Right-handed alpha
Helix 14
14
A
299 313Right-handed alpha
Helix 15
15
A
322 326Right-handed 310
Helix 16
16
A
354 361Right-handed alpha
Helix 17
17
B
51 56Right-handed alpha
Helix 18
18
B
58 69Right-handed alpha
Helix 19
19
B
69 75Right-handed alpha
Helix 20
20
B
81 93Right-handed alpha
Helix 21
21
B
96 115Right-handed alpha
Helix 22
22
B
118 123Right-handed 310
Helix 23
23
B
141 154Right-handed alpha
Helix 24
24
B
167 183Right-handed alpha
Helix 25
25
B
198 208Right-handed alpha
Helix 26
26
B
225 235Right-handed alpha
Helix 27
27
B
248 259Right-handed alpha
Helix 28
28
B
267 272Right-handed alpha
Helix 29
29
B
273 287Right-handed alpha
Helix 30
30
B
299 312Right-handed alpha
Helix 31
31
B
322 326Right-handed 310
Helix 32
32
B
354 361Right-handed alpha
Helix 33
33
C
51 56Right-handed alpha
Helix 34
34
C
58 69Right-handed alpha
Helix 35
35
C
69 75Right-handed alpha
Helix 36
36
C
81 93Right-handed alpha
Helix 37
37
C
96 115Right-handed alpha
Helix 38
38
C
118 123Right-handed 310
Helix 39
39
C
141 154Right-handed alpha
Helix 40
40
C
167 183Right-handed alpha
Helix 41
41
C
198 208Right-handed alpha
Helix 42
42
C
225 235Right-handed alpha
Helix 43
43
C
248 259Right-handed alpha
Helix 44
44
C
267 272Right-handed alpha
Helix 45
45
C
273 287Right-handed alpha
Helix 46
46
C
299 313Right-handed alpha
Helix 47
47
C
322 326Right-handed 310
Helix 48
48
C
354 361Right-handed alpha
Helix 49
49
D
51 56Right-handed alpha
Helix 50
50
D
58 69Right-handed alpha
Helix 51
51
D
69 75Right-handed alpha
Helix 52
52
D
81 93Right-handed alpha
Helix 53
53
D
96 115Right-handed alpha
Helix 54
54
D
118 123Right-handed 310
Helix 55
55
D
141 154Right-handed alpha
Helix 56
56
D
167 183Right-handed alpha
Helix 57
57
D
198 208Right-handed alpha
Helix 58
58
D
225 235Right-handed alpha
Helix 59
59
D
248 259Right-handed alpha
Helix 60
60
D
267 272Right-handed alpha
Helix 61
61
D
273 287Right-handed alpha
Helix 62
62
D
299 313Right-handed alpha
Helix 63
63
D
322 326Right-handed 310
Helix 64
64
D
354 361Right-handed alpha
Helix 65
65
E
51 56Right-handed alpha
Helix 66
66
E
58 69Right-handed alpha
Helix 67
67
E
69 75Right-handed alpha
Helix 68
68
E
81 93Right-handed alpha
Helix 69
69
E
96 115Right-handed alpha
Helix 70
70
E
118 123Right-handed 310
Helix 71
71
E
141 154Right-handed alpha
Helix 72
72
E
167 183Right-handed alpha
Helix 73
73
E
198 208Right-handed alpha
Helix 74
74
E
225 235Right-handed alpha
Helix 75
75
E
248 259Right-handed alpha
Helix 76
76
E
267 272Right-handed alpha
Helix 77
77
E
273 287Right-handed alpha
Helix 78
78
E
299 313Right-handed alpha
Helix 79
79
E
322 326Right-handed 310
Helix 80
80
E
354 361Right-handed alpha
Helix 81
81
F
51 56Right-handed alpha
Helix 82
82
F
58 69Right-handed alpha
Helix 83
83
F
69 75Right-handed alpha
Helix 84
84
F
81 93Right-handed alpha
Helix 85
85
F
96 115Right-handed alpha
Helix 86
86
F
118 124Right-handed 310
Helix 87
87
F
141 154Right-handed alpha
Helix 88
88
F
167 183Right-handed alpha
Helix 89
89
F
198 208Right-handed alpha
Helix 90
90
F
225 235Right-handed alpha
Helix 91
91
F
248 259Right-handed alpha
Helix 92
92
F
267 272Right-handed alpha
Helix 93
93
F
273 287Right-handed alpha
Helix 94
94
F
299 313Right-handed alpha
Helix 95
95
F
322 326Right-handed 310
Helix 96
96
F
354 361Right-handed alpha
Helix 97
97
G
51 56Right-handed alpha
Helix 98
98
G
58 69Right-handed alpha
Helix 99
99
G
69 75Right-handed alpha
Helix 100
100
G
81 93Right-handed alpha
Helix 101
101
G
96 115Right-handed alpha
Helix 102
102
G
118 124Right-handed 310
Helix 103
103
G
141 154Right-handed alpha
Helix 104
104
G
167 183Right-handed alpha
Helix 105
105
G
198 208Right-handed alpha
Helix 106
106
G
225 235Right-handed alpha
Helix 107
107
G
248 259Right-handed alpha
Helix 108
108
G
267 272Right-handed alpha
Helix 109
109
G
273 287Right-handed alpha
Helix 110
110
G
299 312Right-handed alpha
Helix 111
111
G
322 326Right-handed 310
Helix 112
112
G
354 361Right-handed alpha
Helix 113
113
H
51 56Right-handed alpha
Helix 114
114
H
58 69Right-handed alpha
Helix 115
115
H
69 75Right-handed alpha
Helix 116
116
H
81 93Right-handed alpha
Helix 117
117
H
96 115Right-handed alpha
Helix 118
118
H
118 123Right-handed 310
Helix 119
119
H
141 154Right-handed alpha
Helix 120
120
H
167 182Right-handed alpha
Helix 121
121
H
198 208Right-handed alpha
Helix 122
122
H
225 235Right-handed alpha
Helix 123
123
H
248 259Right-handed alpha
Helix 124
124
H
267 272Right-handed alpha
Helix 125
125
H
273 287Right-handed alpha
Helix 126
126
H
299 313Right-handed alpha
Helix 127
127
H
322 326Right-handed 310
Helix 128
128
H
354 361Right-handed alpha
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There are 24 sheets in PDB entry 2P88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
24 38anti-parallel
Strand 3
A
3 21anti-parallel
Strand 4
A
362 368anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
340 341anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
159 163parallel
Strand 3
A
187 191parallel
Strand 4
A
217 218parallel
Strand 5
A
240 242parallel
Strand 6
A
263 266parallel
Strand 7
A
290 293parallel
Strand 8
A
316 319parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
24 38anti-parallel
Strand 3
B
3 21anti-parallel
Strand 4
B
362 368anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
340 341anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
159 163parallel
Strand 3
B
187 191parallel
Strand 4
B
217 218parallel
Strand 5
B
240 242parallel
Strand 6
B
263 266parallel
Strand 7
B
290 293parallel
Strand 8
B
316 319parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 48first strand
Strand 2
C
24 38anti-parallel
Strand 3
C
3 21anti-parallel
Strand 4
C
362 368anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
340 341anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 137first strand
Strand 2
C
159 163parallel
Strand 3
C
187 191parallel
Strand 4
C
217 218parallel
Strand 5
C
240 242parallel
Strand 6
C
263 266parallel
Strand 7
C
290 293parallel
Strand 8
C
316 319parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 48first strand
Strand 2
D
24 38anti-parallel
Strand 3
D
3 21anti-parallel
Strand 4
D
362 368anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 132first strand
Strand 2
D
340 341anti-parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
135 137first strand
Strand 2
D
159 163parallel
Strand 3
D
187 191parallel
Strand 4
D
217 218parallel
Strand 5
D
240 242parallel
Strand 6
D
263 266parallel
Strand 7
D
290 293parallel
Strand 8
D
316 319parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 48first strand
Strand 2
E
24 38anti-parallel
Strand 3
E
3 21anti-parallel
Strand 4
E
362 368anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
131 132first strand
Strand 2
E
340 341anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
135 137first strand
Strand 2
E
159 163parallel
Strand 3
E
187 191parallel
Strand 4
E
217 218parallel
Strand 5
E
240 242parallel
Strand 6
E
263 266parallel
Strand 7
E
290 293parallel
Strand 8
E
316 319parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
43 48first strand
Strand 2
F
24 38anti-parallel
Strand 3
F
3 21anti-parallel
Strand 4
F
362 368anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
131 132first strand
Strand 2
F
340 341anti-parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
135 137first strand
Strand 2
F
159 163parallel
Strand 3
F
187 191parallel
Strand 4
F
217 218parallel
Strand 5
F
240 242parallel
Strand 6
F
263 266parallel
Strand 7
F
290 293parallel
Strand 8
F
316 319parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
43 48first strand
Strand 2
G
24 38anti-parallel
Strand 3
G
3 21anti-parallel
Strand 4
G
362 368anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
131 132first strand
Strand 2
G
340 341anti-parallel
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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
135 137first strand
Strand 2
G
159 163parallel
Strand 3
G
187 191parallel
Strand 4
G
217 218parallel
Strand 5
G
240 242parallel
Strand 6
G
263 266parallel
Strand 7
G
290 293parallel
Strand 8
G
316 319parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
43 48first strand
Strand 2
H
24 38anti-parallel
Strand 3
H
3 21anti-parallel
Strand 4
H
362 368anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 132first strand
Strand 2
H
340 341anti-parallel
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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 137first strand
Strand 2
H
159 163parallel
Strand 3
H
187 191parallel
Strand 4
H
217 218parallel
Strand 5
H
240 242parallel
Strand 6
H
263 266parallel
Strand 7
H
290 293parallel
Strand 8
H
316 319parallel
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