Analysis of interatomic Contacts of Structural Units in PDB entry:
2P8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P8C entry

There is 1 chain in PDB entry 2P8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2P8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 56Right-handed alpha
Helix 2
2
A
58 69Right-handed alpha
Helix 3
3
A
71 75Right-handed 310
Helix 4
4
A
81 93Right-handed alpha
Helix 5
5
A
96 116Right-handed alpha
Helix 6
6
A
118 123Right-handed alpha
Helix 7
7
A
141 154Right-handed alpha
Helix 8
8
A
167 183Right-handed alpha
Helix 9
9
A
198 208Right-handed alpha
Helix 10
10
A
209 213Right-handed 310
Helix 11
11
A
225 234Right-handed alpha
Helix 12
12
A
248 259Right-handed alpha
Helix 13
13
A
267 272Right-handed alpha
Helix 14
14
A
273 287Right-handed alpha
Helix 15
15
A
299 312Right-handed alpha
Helix 16
16
A
322 327Right-handed alpha
Helix 17
17
A
354 361Right-handed alpha
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There are 3 sheets in PDB entry 2P8C. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
24 38anti-parallel
Strand 3
A
3 21anti-parallel
Strand 4
A
362 368anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
340 341anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
159 163parallel
Strand 3
A
187 191parallel
Strand 4
A
217 218parallel
Strand 5
A
240 242parallel
Strand 6
A
263 266parallel
Strand 7
A
290 293parallel
Strand 8
A
316 319parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il