Analysis of interatomic Contacts of Structural Units in PDB entry:
2P8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P8E entry

There are 4 chains in PDB entry 2P8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4ALA 241
A
 ASP 243PHE 295
B
 PHE 4ALA 241
B
 ASP 243PHE 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 2P8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 81Right-handed alpha
Helix 2
2
A
98 119Right-handed alpha
Helix 3
3
A
173 183Right-handed alpha
Helix 4
4
A
205 208Right-handed 310
Helix 5
5
A
214 218Right-handed 310
Helix 6
6
A
242 247Right-handed alpha
Helix 7
7
A
250 263Right-handed alpha
Helix 8
8
A
267 282Right-handed alpha
Helix 9
9
B
65 81Right-handed alpha
Helix 10
10
B
98 118Right-handed alpha
Helix 11
11
B
119 126Right-handed 310
Helix 12
12
B
173 183Right-handed alpha
Helix 13
13
B
205 208Right-handed 310
Helix 14
14
B
214 218Right-handed 310
Helix 15
15
B
242 247Right-handed alpha
Helix 16
16
B
250 265Right-handed alpha
Helix 17
17
B
267 282Right-handed alpha
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There are 8 sheets in PDB entry 2P8E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 19first strand
Strand 2
A
22 31anti-parallel
Strand 3
A
288 294anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
153 158anti-parallel
Strand 6
A
161 165anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
50 62anti-parallel
Strand 3
A
131 132anti-parallel
Strand 4
A
202 203anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
50 62anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
143 149anti-parallel
Strand 5
A
225 230anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 192anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 19first strand
Strand 2
B
22 31anti-parallel
Strand 3
B
288 294anti-parallel
Strand 4
B
235 241anti-parallel
Strand 5
B
153 158anti-parallel
Strand 6
B
161 165anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 46first strand
Strand 2
B
50 62anti-parallel
Strand 3
B
131 132anti-parallel
Strand 4
B
202 203anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 46first strand
Strand 2
B
50 62anti-parallel
Strand 3
B
134 139anti-parallel
Strand 4
B
143 149anti-parallel
Strand 5
B
225 230anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
191 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il