Analysis of interatomic Contacts of Structural Units in PDB entry:
2P8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P8J entry

There are 2 chains in PDB entry 2P8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 208
B
 MSE 1ILE 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2P8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
37 44Right-handed alpha
Helix 3
3
A
54 69Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
102 116Right-handed alpha
Helix 6
6
A
161 168Right-handed alpha
Helix 7
7
B
8 20Right-handed alpha
Helix 8
8
B
37 44Right-handed alpha
Helix 9
9
B
54 69Right-handed alpha
Helix 10
10
B
97 101Right-handed 310
Helix 11
11
B
102 116Right-handed alpha
Helix 12
12
B
161 168Right-handed alpha
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There are 2 sheets in PDB entry 2P8J. Click on sheet of interest to get list of strands forming it: A, B,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
47 52parallel
Strand 3
A
25 29parallel
Strand 4
A
89 94parallel
Strand 5
A
117 129parallel
Strand 6
A
189 201anti-parallel
Strand 7
A
173 186anti-parallel
Strand 8
B
173 186anti-parallel
Strand 9
B
189 201anti-parallel
Strand 10
B
117 129anti-parallel
Strand 11
B
89 94parallel
Strand 12
B
25 29parallel
Strand 13
B
47 52parallel
Strand 14
B
74 76parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
155 160anti-parallel
Strand 4
A
117 129parallel
Strand 5
A
189 201anti-parallel
Strand 6
A
173 186anti-parallel
Strand 7
B
173 186anti-parallel
Strand 8
B
189 201anti-parallel
Strand 9
B
117 129anti-parallel
Strand 10
B
153 160parallel
Strand 11
B
145 150anti-parallel
Strand 12
B
139 142anti-parallel
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