Analysis of interatomic Contacts of Structural Units in PDB entry:
2P8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P8R entry

There is 1 chain in PDB entry 2P8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2062PHE 2307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 2P8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2062 2074Right-handed alpha
Helix 2
2
A
2075 2081Right-handed 310
Helix 3
3
A
2101 2110Right-handed alpha
Helix 4
4
A
2182 2196Right-handed alpha
Helix 5
5
A
2224 2234Right-handed alpha
Helix 6
6
A
2245 2247Right-handed 310
Helix 7
7
A
2277 2281Right-handed 310
Helix 8
8
A
2299 2303Right-handed 310
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There are 3 sheets in PDB entry 2P8R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2083 2085first strand
Strand 2
A
2215 2223parallel
Strand 3
A
2205 2212anti-parallel
Strand 4
A
2166 2174parallel
Strand 5
A
2118 2124anti-parallel
Strand 6
A
2132 2139anti-parallel
Strand 7
A
2263 2267parallel
Strand 8
A
2289 2291anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2083 2085first strand
Strand 2
A
2215 2223parallel
Strand 3
A
2249 2257anti-parallel
Strand 4
A
2096 2100parallel
Strand 5
A
2132 2139parallel
Strand 6
A
2263 2267parallel
Strand 7
A
2289 2291anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2144 2145first strand
Strand 2
A
2150 2151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il