Analysis of interatomic Contacts of Structural Units in PDB entry:
2P8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P8Y entry

There are 2 chains in PDB entry 2P8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 ALA 3ILE 698
T
 ARG 700LEU 842
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2P8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
T
5 13Right-handed alpha
Helix 2
2
T
14 17Right-handed 310
Helix 3
3
T
31 44Right-handed alpha
Helix 4
4
T
82 89Right-handed alpha
Helix 5
5
T
112 121Right-handed alpha
Helix 6
6
T
136 148Right-handed alpha
Helix 7
7
T
159 166Right-handed alpha
Helix 8
8
T
170 193Right-handed alpha
Helix 9
9
T
194 198Right-handed 310
Helix 10
10
T
203 207Right-handed 310
Helix 11
11
T
221 234Right-handed alpha
Helix 12
12
T
236 244Right-handed alpha
Helix 13
13
T
271 277Right-handed alpha
Helix 14
14
T
277 290Right-handed alpha
Helix 15
15
T
295 303Right-handed alpha
Helix 16
16
T
308 314Right-handed 310
Helix 17
17
T
315 328Right-handed alpha
Helix 18
18
T
330 342Right-handed alpha
Helix 19
19
T
348 357Right-handed alpha
Helix 20
20
T
363 371Right-handed alpha
Helix 21
21
T
497 499Right-handed 310
Helix 22
22
T
500 515Right-handed alpha
Helix 23
23
T
534 548Right-handed alpha
Helix 24
24
T
594 603Right-handed alpha
Helix 25
25
T
611 622Right-handed alpha
Helix 26
26
T
626 632Right-handed alpha
Helix 27
27
T
655 673Right-handed alpha
Helix 28
28
T
701 719Right-handed alpha
Helix 29
29
T
736 750Right-handed alpha
Helix 30
30
T
773 777Right-handed 310
Helix 31
31
T
779 788Right-handed alpha
Helix 32
32
T
813 826Right-handed alpha
Helix 33
33
T
834 839Right-handed 310
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There are 8 sheets in PDB entry 2P8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
74 80first strand
Strand 2
T
97 103anti-parallel
Strand 3
T
19 26parallel
Strand 4
T
124 130parallel
Strand 5
T
152 158parallel
Strand 6
T
209 211parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
249 251first strand
Strand 2
T
256 258anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
426 430first strand
Strand 2
T
410 414anti-parallel
Strand 3
T
467 470anti-parallel
Strand 4
T
379 387anti-parallel
Strand 5
T
394 402anti-parallel
Strand 6
T
453 457anti-parallel
Strand 7
T
433 438anti-parallel
Strand 8
T
441 445anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
404 406first strand
Strand 2
T
447 449anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
519 522first strand
Strand 2
T
528 532anti-parallel
Strand 3
T
489 495anti-parallel
Strand 4
T
554 557anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
680 681first strand
Strand 2
T
564 567parallel
Strand 3
T
722 723anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
575 578first strand
Strand 2
T
585 592anti-parallel
Strand 3
T
684 692anti-parallel
Strand 4
T
644 648parallel
Strand 5
T
633 636anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
731 735first strand
Strand 2
T
766 771anti-parallel
Strand 3
T
753 758anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il