Analysis of interatomic Contacts of Structural Units in PDB entry:
2P9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P9R entry

There are 2 chains in PDB entry 2P9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 103PRO 204
B
 ASP 103GLU 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2P9R. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 133Right-handed 310
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There are 3 sheets in PDB entry 2P9R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
120 128anti-parallel
Strand 3
A
164 170anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
191 198parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
138 145anti-parallel
Strand 5
A
151 159anti-parallel
Strand 6
B
151 159anti-parallel
Strand 7
B
138 145anti-parallel
Strand 8
B
178 185anti-parallel
Strand 9
B
191 198anti-parallel
Strand 10
B
114 115parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 110first strand
Strand 2
B
120 128anti-parallel
Strand 3
B
164 170anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il