Analysis of interatomic Contacts of Structural Units in PDB entry:
2P9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P9T entry

There is 1 chain in PDB entry 2P9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4MET 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 2P9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
36 52Right-handed alpha
Helix 3
3
A
71 76Right-handed alpha
Helix 4
4
A
77 89Right-handed alpha
Helix 5
5
A
100 109Right-handed alpha
Helix 6
6
A
120 124Right-handed 310
Helix 7
7
A
142 155Right-handed alpha
Helix 8
8
A
164 168Right-handed 310
Helix 9
9
A
172 177Right-handed alpha
Helix 10
10
A
186 202Right-handed alpha
Helix 11
11
A
216 218Right-handed 310
Helix 12
12
A
219 227Right-handed alpha
Helix 13
13
A
238 249Right-handed alpha
Helix 14
14
A
258 263Right-handed alpha
Helix 15
15
A
264 275Right-handed alpha
Helix 16
16
A
316 329Right-handed alpha
Helix 17
17
A
344 347Right-handed 310
Helix 18
18
A
348 364Right-handed alpha
Helix 19
19
A
373 382Right-handed alpha
Helix 20
20
A
394 402Right-handed alpha
Helix 21
21
A
407 412Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 2P9T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
114 117parallel
Strand 3
A
56 60parallel
Strand 4
A
17 21parallel
Strand 5
A
159 162parallel
Strand 6
A
183 185parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
138 140anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
232 236parallel
Strand 3
A
207 212parallel
Strand 4
A
332 336parallel
Strand 5
A
367 370parallel
Strand 6
A
390 391parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 301first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
311 315anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il