Analysis of interatomic Contacts of Structural Units in PDB entry:
2PA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PA8 entry

There are 2 chains in PDB entry 2PA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 2LYS 265
L
 MET 1LYS 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2PA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
21 35Right-handed alpha
Helix 2
2
D
54 63Right-handed alpha
Helix 3
3
D
71 76Right-handed alpha
Helix 4
4
D
78 82Right-handed 310
Helix 5
5
D
112 114Right-handed 310
Helix 6
6
D
153 157Right-handed 310
Helix 7
7
D
178 183Right-handed alpha
Helix 8
8
D
199 203Right-handed 310
Helix 9
9
D
207 214Right-handed alpha
Helix 10
10
D
237 264Right-handed alpha
Helix 11
11
L
21 34Right-handed alpha
Helix 12
12
L
64 92Right-handed alpha
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There are 5 sheets in PDB entry 2PA8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
12 18anti-parallel
Strand 3
D
217 232anti-parallel
Strand 4
D
159 172anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 49first strand
Strand 2
D
138 148anti-parallel
Strand 3
D
93 101anti-parallel
Strand 4
D
115 116anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 110first strand
Strand 2
D
129 133anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
188 191first strand
Strand 2
D
194 197anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
2 9first strand
Strand 2
L
12 18anti-parallel
Strand 3
L
53 59anti-parallel
Strand 4
L
38 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il