Analysis of interatomic Contacts of Structural Units in PDB entry:
2PAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PAJ entry

There is 1 chain in PDB entry 2PAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10VAL 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2PAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 84Right-handed 310
Helix 2
2
A
106 110Right-handed 310
Helix 3
3
A
111 128Right-handed alpha
Helix 4
4
A
148 160Right-handed alpha
Helix 5
5
A
182 186Right-handed 310
Helix 6
6
A
189 204Right-handed alpha
Helix 7
7
A
227 241Right-handed alpha
Helix 8
8
A
266 274Right-handed alpha
Helix 9
9
A
290 301Right-handed alpha
Helix 10
10
A
307 313Right-handed alpha
Helix 11
11
A
323 328Right-handed alpha
Helix 12
12
A
336 341Right-handed alpha
Helix 13
13
A
345 360Right-handed alpha
Helix 14
14
A
382 391Right-handed alpha
Helix 15
15
A
391 399Right-handed alpha
Helix 16
16
A
421 425Right-handed 310
Helix 17
17
A
429 431Right-handed 310
Helix 18
18
A
432 437Right-handed alpha
Helix 19
19
A
463 484Right-handed alpha
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There are 3 sheets in PDB entry 2PAJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
11 15anti-parallel
Strand 4
A
59 62parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
67 70parallel
Strand 3
A
414 418anti-parallel
Strand 4
A
442 448anti-parallel
Strand 5
A
451 455anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
131 136parallel
Strand 3
A
163 168parallel
Strand 4
A
213 217parallel
Strand 5
A
244 248parallel
Strand 6
A
281 284parallel
Strand 7
A
303 306parallel
Strand 8
A
331 333parallel
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