Analysis of interatomic Contacts of Structural Units in PDB entry:
2PB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PB0 entry

There are 2 chains in PDB entry 2PB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12ALA 405
B
 LEU 18VAL 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 2PB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
60 72Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
107 127Right-handed alpha
Helix 6
6
A
145 152Right-handed alpha
Helix 7
7
A
154 159Right-handed alpha
Helix 8
8
A
175 183Right-handed alpha
Helix 9
9
A
205 220Right-handed alpha
Helix 10
10
A
239 245Right-handed alpha
Helix 11
11
A
254 259Right-handed 310
Helix 12
12
A
269 274Right-handed alpha
Helix 13
13
A
288 303Right-handed alpha
Helix 14
14
A
304 330Right-handed alpha
Helix 15
15
A
348 351Right-handed 310
Helix 16
16
A
353 364Right-handed alpha
Helix 17
17
A
385 405Right-handed alpha
Helix 18
18
B
48 53Right-handed alpha
Helix 19
19
B
60 72Right-handed alpha
Helix 20
20
B
83 97Right-handed alpha
Helix 21
21
B
107 127Right-handed alpha
Helix 22
22
B
145 152Right-handed alpha
Helix 23
23
B
154 159Right-handed alpha
Helix 24
24
B
175 183Right-handed alpha
Helix 25
25
B
205 220Right-handed alpha
Helix 26
26
B
239 245Right-handed alpha
Helix 27
27
B
254 259Right-handed 310
Helix 28
28
B
269 274Right-handed alpha
Helix 29
29
B
288 303Right-handed alpha
Helix 30
30
B
304 330Right-handed alpha
Helix 31
31
B
348 351Right-handed 310
Helix 32
32
B
353 364Right-handed alpha
Helix 33
33
B
385 404Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2PB0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
43 46anti-parallel
Strand 4
A
366 367parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
133 137parallel
Strand 3
A
187 192parallel
Strand 4
A
222 226parallel
Strand 5
A
250 253parallel
Strand 6
A
264 268anti-parallel
Strand 7
A
101 105anti-parallel
Strand 8
A
284 285parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 338first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
375 378anti-parallel
Strand 4
A
369 370anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
43 46anti-parallel
Strand 4
B
366 367parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 105first strand
Strand 2
B
264 268anti-parallel
Strand 3
B
250 253anti-parallel
Strand 4
B
222 226parallel
Strand 5
B
187 192parallel
Strand 6
B
133 137parallel
Strand 7
B
168 171parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 196first strand
Strand 2
B
202 203anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 338first strand
Strand 2
B
341 346anti-parallel
Strand 3
B
375 378anti-parallel
Strand 4
B
369 370anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il