Analysis of interatomic Contacts of Structural Units in PDB entry:
2PBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PBL entry

There are 4 chains in PDB entry 2PBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 261
B
 GLY 0ALA 261
C
 GLY 0ALA 261
D
 GLY 0ALA 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 2PBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
15 17Right-handed 310
Helix 3
3
A
18 35Right-handed alpha
Helix 4
4
A
77 84Right-handed 310
Helix 5
5
A
85 91Right-handed alpha
Helix 6
6
A
107 126Right-handed alpha
Helix 7
7
A
136 145Right-handed alpha
Helix 8
8
A
152 157Right-handed alpha
Helix 9
9
A
171 178Right-handed 310
Helix 10
10
A
179 184Right-handed alpha
Helix 11
11
A
186 193Right-handed alpha
Helix 12
12
A
194 198Right-handed 310
Helix 13
13
A
215 230Right-handed alpha
Helix 14
14
A
245 250Right-handed 310
Helix 15
15
A
253 261Right-handed alpha
Helix 16
16
B
9 13Right-handed 310
Helix 17
17
B
15 17Right-handed 310
Helix 18
18
B
18 35Right-handed alpha
Helix 19
19
B
77 84Right-handed 310
Helix 20
20
B
85 91Right-handed alpha
Helix 21
21
B
107 126Right-handed alpha
Helix 22
22
B
136 145Right-handed alpha
Helix 23
23
B
152 157Right-handed alpha
Helix 24
24
B
171 178Right-handed 310
Helix 25
25
B
179 184Right-handed alpha
Helix 26
26
B
186 193Right-handed alpha
Helix 27
27
B
194 198Right-handed 310
Helix 28
28
B
215 230Right-handed alpha
Helix 29
29
B
245 250Right-handed 310
Helix 30
30
B
253 261Right-handed alpha
Helix 31
31
C
4 8Right-handed 310
Helix 32
32
C
15 17Right-handed 310
Helix 33
33
C
18 35Right-handed alpha
Helix 34
34
C
77 84Right-handed 310
Helix 35
35
C
85 90Right-handed alpha
Helix 36
36
C
107 126Right-handed alpha
Helix 37
37
C
136 145Right-handed alpha
Helix 38
38
C
152 157Right-handed alpha
Helix 39
39
C
171 178Right-handed 310
Helix 40
40
C
179 184Right-handed alpha
Helix 41
41
C
186 193Right-handed alpha
Helix 42
42
C
194 198Right-handed 310
Helix 43
43
C
215 230Right-handed alpha
Helix 44
44
C
245 250Right-handed 310
Helix 45
45
C
253 261Right-handed alpha
Helix 46
46
D
15 17Right-handed 310
Helix 47
47
D
18 35Right-handed alpha
Helix 48
48
D
77 84Right-handed 310
Helix 49
49
D
85 91Right-handed alpha
Helix 50
50
D
107 126Right-handed alpha
Helix 51
51
D
136 145Right-handed alpha
Helix 52
52
D
152 157Right-handed alpha
Helix 53
53
D
171 178Right-handed 310
Helix 54
54
D
179 184Right-handed alpha
Helix 55
55
D
186 193Right-handed alpha
Helix 56
56
D
194 198Right-handed 310
Helix 57
57
D
215 230Right-handed alpha
Helix 58
58
D
245 250Right-handed 310
Helix 59
59
D
253 260Right-handed alpha
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There are 4 sheets in PDB entry 2PBL. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 43first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
63 68parallel
Strand 5
A
130 135parallel
Strand 6
A
159 165parallel
Strand 7
A
205 211parallel
Strand 8
A
232 236parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 43first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
94 98anti-parallel
Strand 4
B
64 68parallel
Strand 5
B
130 135parallel
Strand 6
B
159 165parallel
Strand 7
B
205 211parallel
Strand 8
B
232 236parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 43first strand
Strand 2
C
51 55anti-parallel
Strand 3
C
94 98anti-parallel
Strand 4
C
64 68parallel
Strand 5
C
130 135parallel
Strand 6
C
159 165parallel
Strand 7
C
205 211parallel
Strand 8
C
232 236parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 43first strand
Strand 2
D
51 55anti-parallel
Strand 3
D
94 98anti-parallel
Strand 4
D
64 68parallel
Strand 5
D
130 135parallel
Strand 6
D
159 165parallel
Strand 7
D
205 211parallel
Strand 8
D
232 236parallel
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