Analysis of interatomic Contacts of Structural Units in PDB entry:
2PBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PBP entry

There is 1 chain in PDB entry 2PBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4LYS 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2PBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 26Right-handed 310
Helix 2
2
A
30 47Right-handed alpha
Helix 3
3
A
67 73Right-handed alpha
Helix 4
4
A
75 83Right-handed alpha
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
108 116Right-handed alpha
Helix 7
7
A
130 136Right-handed 310
Helix 8
8
A
142 152Right-handed alpha
Helix 9
9
A
152 163Right-handed alpha
Helix 10
10
A
168 174Right-handed alpha
Helix 11
11
A
182 184Right-handed 310
Helix 12
12
A
185 199Right-handed alpha
Helix 13
13
A
201 218Right-handed alpha
Helix 14
14
A
219 235Right-handed alpha
Helix 15
15
A
237 249Right-handed alpha
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There are 2 sheets in PDB entry 2PBP. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
15 20anti-parallel
Strand 3
A
52 57parallel
Strand 4
A
98 102parallel
Strand 5
A
119 123parallel
Strand 6
A
179 181parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
105 107parallel
Strand 3
A
127 129parallel
Strand 4
A
166 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il