Analysis of interatomic Contacts of Structural Units in PDB entry:
2PBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PBZ entry

There are 3 chains in PDB entry 2PBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4THR 312
B
 ILE 4THR 312
C
 ILE 4THR 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 2PBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
35 41Right-handed alpha
Helix 3
3
A
69 74Right-handed alpha
Helix 4
4
A
75 81Right-handed alpha
Helix 5
5
A
91 97Right-handed 310
Helix 6
6
A
98 110Right-handed alpha
Helix 7
7
A
223 242Right-handed alpha
Helix 8
8
A
271 275Right-handed 310
Helix 9
9
A
279 284Right-handed alpha
Helix 10
10
A
289 303Right-handed alpha
Helix 11
11
B
12 23Right-handed alpha
Helix 12
12
B
35 41Right-handed alpha
Helix 13
13
B
69 74Right-handed alpha
Helix 14
14
B
75 81Right-handed alpha
Helix 15
15
B
91 97Right-handed 310
Helix 16
16
B
98 109Right-handed alpha
Helix 17
17
B
223 242Right-handed alpha
Helix 18
18
B
271 275Right-handed 310
Helix 19
19
B
279 284Right-handed alpha
Helix 20
20
B
289 303Right-handed alpha
Helix 21
21
C
12 23Right-handed alpha
Helix 22
22
C
35 41Right-handed alpha
Helix 23
23
C
69 74Right-handed alpha
Helix 24
24
C
75 81Right-handed alpha
Helix 25
25
C
91 97Right-handed 310
Helix 26
26
C
98 109Right-handed alpha
Helix 27
27
C
223 242Right-handed alpha
Helix 28
28
C
271 275Right-handed 310
Helix 29
29
C
279 284Right-handed alpha
Helix 30
30
C
289 303Right-handed alpha
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There are 9 sheets in PDB entry 2PBZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
27 31parallel
Strand 3
A
47 50parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
161 164anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 266first strand
Strand 2
A
249 255anti-parallel
Strand 3
A
170 178anti-parallel
Strand 4
A
183 194anti-parallel
Strand 5
A
211 216anti-parallel
Strand 6
B
218 219anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
C
211 216anti-parallel
Strand 3
C
183 194anti-parallel
Strand 4
C
170 178anti-parallel
Strand 5
C
249 255anti-parallel
Strand 6
C
261 266anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
27 31parallel
Strand 3
B
47 50parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
128 131anti-parallel
Strand 3
B
161 164anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 266first strand
Strand 2
B
249 255anti-parallel
Strand 3
B
170 178anti-parallel
Strand 4
B
183 194anti-parallel
Strand 5
B
211 216anti-parallel
Strand 6
C
218 219anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 8first strand
Strand 2
C
27 31parallel
Strand 3
C
47 50parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 148first strand
Strand 2
C
128 131anti-parallel
Strand 3
C
161 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il