Analysis of interatomic Contacts of Structural Units in PDB entry:
2PCN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PCN entry

There is 1 chain in PDB entry 2PCN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3GLY 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2PCN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 13Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
75 85Right-handed alpha
Helix 4
4
A
98 103Right-handed alpha
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There are 3 sheets in PDB entry 2PCN. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
143 147anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
60 64parallel
Strand 6
A
89 96parallel
Strand 7
A
72 74parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
108 114anti-parallel
Strand 3
A
89 96parallel
Strand 4
A
60 64parallel
Strand 5
A
32 40parallel
Strand 6
A
126 127anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
136 138anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il