Analysis of interatomic Contacts of Structural Units in PDB entry:
2PD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PD6 entry

There are 4 chains in PDB entry 2PD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 259
B
 LEU 9PHE 260
C
 ALA 12PHE 260
D
 ASN 7PHE 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 2PD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
44 54Right-handed alpha
Helix 3
3
A
78 94Right-handed alpha
Helix 4
4
A
111 115Right-handed 310
Helix 5
5
A
116 128Right-handed alpha
Helix 6
6
A
128 146Right-handed alpha
Helix 7
7
A
157 162Right-handed alpha
Helix 8
8
A
166 188Right-handed alpha
Helix 9
9
A
218 222Right-handed 310
Helix 10
10
A
229 242Right-handed alpha
Helix 11
11
A
243 246Right-handed 310
Helix 12
12
B
21 34Right-handed alpha
Helix 13
13
B
44 55Right-handed alpha
Helix 14
14
B
78 94Right-handed alpha
Helix 15
15
B
111 115Right-handed 310
Helix 16
16
B
116 128Right-handed alpha
Helix 17
17
B
128 145Right-handed alpha
Helix 18
18
B
157 162Right-handed alpha
Helix 19
19
B
166 188Right-handed alpha
Helix 20
20
B
211 221Right-handed alpha
Helix 21
21
B
229 242Right-handed alpha
Helix 22
22
B
243 246Right-handed 310
Helix 23
23
C
21 34Right-handed alpha
Helix 24
24
C
44 55Right-handed alpha
Helix 25
25
C
78 94Right-handed alpha
Helix 26
26
C
111 115Right-handed 310
Helix 27
27
C
116 128Right-handed alpha
Helix 28
28
C
128 146Right-handed alpha
Helix 29
29
C
157 162Right-handed alpha
Helix 30
30
C
166 188Right-handed alpha
Helix 31
31
C
204 208Right-handed 310
Helix 32
32
C
211 221Right-handed alpha
Helix 33
33
C
229 242Right-handed alpha
Helix 34
34
C
243 246Right-handed 310
Helix 35
35
D
21 34Right-handed alpha
Helix 36
36
D
44 55Right-handed alpha
Helix 37
37
D
78 94Right-handed alpha
Helix 38
38
D
111 115Right-handed 310
Helix 39
39
D
116 128Right-handed alpha
Helix 40
40
D
128 145Right-handed alpha
Helix 41
41
D
157 162Right-handed alpha
Helix 42
42
D
166 188Right-handed alpha
Helix 43
43
D
211 221Right-handed alpha
Helix 44
44
D
229 242Right-handed alpha
Helix 45
45
D
243 246Right-handed 310
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There are 4 sheets in PDB entry 2PD6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
37 42parallel
Strand 3
A
13 17parallel
Strand 4
A
99 102parallel
Strand 5
A
149 154parallel
Strand 6
A
192 199parallel
Strand 7
A
252 255parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
37 42parallel
Strand 3
B
13 17parallel
Strand 4
B
99 102parallel
Strand 5
B
149 154parallel
Strand 6
B
192 199parallel
Strand 7
B
252 255parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
37 42parallel
Strand 3
C
13 17parallel
Strand 4
C
99 102parallel
Strand 5
C
149 154parallel
Strand 6
C
192 199parallel
Strand 7
C
252 255parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 73first strand
Strand 2
D
37 42parallel
Strand 3
D
13 17parallel
Strand 4
D
99 102parallel
Strand 5
D
149 154parallel
Strand 6
D
192 199parallel
Strand 7
D
252 255parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il