Analysis of interatomic Contacts of Structural Units in PDB entry:
2PDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PDL entry

There is 1 chain in PDB entry 2PDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2PDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 37Right-handed alpha
Helix 2
2
A
45 49Right-handed 310
Helix 3
3
A
50 64Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
79 83Right-handed 310
Helix 6
6
A
84 86Right-handed 310
Helix 7
7
A
87 100Right-handed alpha
Helix 8
8
A
136 150Right-handed alpha
Helix 9
9
A
162 171Right-handed alpha
Helix 10
10
A
192 202Right-handed alpha
Helix 11
11
A
226 229Right-handed 310
Helix 12
12
A
230 240Right-handed alpha
Helix 13
13
A
243 255Right-handed alpha
Helix 14
14
A
265 274Right-handed alpha
Helix 15
15
A
281 290Right-handed alpha
Helix 16
16
A
300 304Right-handed 310
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There are 2 sheets in PDB entry 2PDL. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
11 13anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
73 78parallel
Strand 3
A
106 109parallel
Strand 4
A
156 159parallel
Strand 5
A
181 185parallel
Strand 6
A
205 209parallel
Strand 7
A
258 259parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il