Analysis of interatomic Contacts of Structural Units in PDB entry:
2PEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PEE entry

There are 2 chains in PDB entry 2PEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 36LEU 422
B
 VAL 36LEU 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2PEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 45Right-handed 310
Helix 2
2
A
56 73Right-handed alpha
Helix 3
3
A
84 97Right-handed alpha
Helix 4
4
A
100 112Right-handed alpha
Helix 5
5
A
116 131Right-handed alpha
Helix 6
6
A
155 166Right-handed alpha
Helix 7
7
A
176 191Right-handed alpha
Helix 8
8
A
225 227Right-handed 310
Helix 9
9
A
268 270Right-handed 310
Helix 10
10
A
284 291Right-handed alpha
Helix 11
11
A
293 303Right-handed alpha
Helix 12
12
A
324 332Right-handed alpha
Helix 13
13
A
334 338Right-handed 310
Helix 14
14
B
56 73Right-handed alpha
Helix 15
15
B
84 97Right-handed alpha
Helix 16
16
B
100 112Right-handed alpha
Helix 17
17
B
116 131Right-handed alpha
Helix 18
18
B
155 166Right-handed alpha
Helix 19
19
B
176 191Right-handed alpha
Helix 20
20
B
225 227Right-handed 310
Helix 21
21
B
268 270Right-handed 310
Helix 22
22
B
284 292Right-handed alpha
Helix 23
23
B
293 303Right-handed alpha
Helix 24
24
B
324 331Right-handed alpha
Helix 25
25
B
334 338Right-handed 310
Helix 26
26
B
344 346Right-handed 310
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There are 8 sheets in PDB entry 2PEE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
169 173anti-parallel
Strand 3
A
137 148parallel
Strand 4
A
208 218anti-parallel
Strand 5
A
359 368parallel
Strand 6
A
316 323anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
413 419anti-parallel
Strand 3
A
401 407anti-parallel
Strand 4
A
272 279anti-parallel
Strand 5
A
260 266anti-parallel
Strand 6
A
241 256anti-parallel
Strand 7
A
229 235anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
413 419anti-parallel
Strand 3
A
401 407anti-parallel
Strand 4
A
272 279anti-parallel
Strand 5
A
260 266anti-parallel
Strand 6
A
241 256anti-parallel
Strand 7
A
305 314anti-parallel
Strand 8
A
393 396parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
348 349anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
169 173anti-parallel
Strand 3
B
137 148parallel
Strand 4
B
208 218anti-parallel
Strand 5
B
359 368parallel
Strand 6
B
316 323anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
413 419anti-parallel
Strand 3
B
401 407anti-parallel
Strand 4
B
272 279anti-parallel
Strand 5
B
260 266anti-parallel
Strand 6
B
241 256anti-parallel
Strand 7
B
229 235anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
413 419anti-parallel
Strand 3
B
401 407anti-parallel
Strand 4
B
272 279anti-parallel
Strand 5
B
260 266anti-parallel
Strand 6
B
241 256anti-parallel
Strand 7
B
305 314anti-parallel
Strand 8
B
393 396parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
348 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il