Analysis of interatomic Contacts of Structural Units in PDB entry:
2PFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PFL entry

There are 2 chains in PDB entry 2PFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1MET 759
B
 SER 1MET 759
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 2PFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
18 20Right-handed 310
Helix 3
3
A
25 32Right-handed alpha
Helix 4
4
A
40 42Right-handed 310
Helix 5
5
A
48 67Right-handed alpha
Helix 6
6
A
111 113Right-handed 310
Helix 7
7
A
116 124Right-handed alpha
Helix 8
8
A
131 139Right-handed alpha
Helix 9
9
A
144 151Right-handed alpha
Helix 10
10
A
154 162Right-handed alpha
Helix 11
11
A
181 186Right-handed 310
Helix 12
12
A
189 208Right-handed alpha
Helix 13
13
A
213 240Right-handed alpha
Helix 14
14
A
251 268Right-handed alpha
Helix 15
15
A
280 292Right-handed alpha
Helix 16
16
A
298 312Right-handed alpha
Helix 17
17
A
321 326Right-handed alpha
Helix 18
18
A
351 362Right-handed alpha
Helix 19
19
A
381 394Right-handed alpha
Helix 20
20
A
402 409Right-handed alpha
Helix 21
21
A
438 446Right-handed alpha
Helix 22
22
A
472 504Right-handed alpha
Helix 23
23
A
508 513Right-handed alpha
Helix 24
24
A
529 541Right-handed alpha
Helix 25
25
A
571 590Right-handed alpha
Helix 26
26
A
594 596Right-handed 310
Helix 27
27
A
606 614Right-handed 310
Helix 28
28
A
643 652Right-handed alpha
Helix 29
29
A
671 674Right-handed alpha
Helix 30
30
A
678 693Right-handed alpha
Helix 31
31
A
712 720Right-handed alpha
Helix 32
32
A
722 724Right-handed 310
Helix 33
33
A
739 741Right-handed 310
Helix 34
34
A
744 752Right-handed alpha
Helix 35
35
B
5 10Right-handed alpha
Helix 36
36
B
18 20Right-handed 310
Helix 37
37
B
25 32Right-handed alpha
Helix 38
38
B
40 42Right-handed 310
Helix 39
39
B
48 67Right-handed alpha
Helix 40
40
B
111 113Right-handed 310
Helix 41
41
B
116 124Right-handed alpha
Helix 42
42
B
131 139Right-handed alpha
Helix 43
43
B
144 151Right-handed alpha
Helix 44
44
B
154 162Right-handed alpha
Helix 45
45
B
181 186Right-handed 310
Helix 46
46
B
189 208Right-handed alpha
Helix 47
47
B
213 240Right-handed alpha
Helix 48
48
B
251 268Right-handed alpha
Helix 49
49
B
280 292Right-handed alpha
Helix 50
50
B
298 312Right-handed alpha
Helix 51
51
B
321 326Right-handed alpha
Helix 52
52
B
351 362Right-handed alpha
Helix 53
53
B
381 394Right-handed alpha
Helix 54
54
B
402 409Right-handed alpha
Helix 55
55
B
438 446Right-handed alpha
Helix 56
56
B
472 504Right-handed alpha
Helix 57
57
B
508 513Right-handed alpha
Helix 58
58
B
529 540Right-handed alpha
Helix 59
59
B
571 590Right-handed alpha
Helix 60
60
B
594 596Right-handed 310
Helix 61
61
B
606 614Right-handed 310
Helix 62
62
B
643 652Right-handed alpha
Helix 63
63
B
671 674Right-handed alpha
Helix 64
64
B
678 693Right-handed alpha
Helix 65
65
B
712 720Right-handed alpha
Helix 66
66
B
722 724Right-handed 310
Helix 67
67
B
739 741Right-handed 310
Helix 68
68
B
744 752Right-handed alpha
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There are 12 sheets in PDB entry 2PFL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
370 375parallel
Strand 3
A
398 401parallel
Strand 4
A
704 709anti-parallel
Strand 5
A
666 669parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 417first strand
Strand 2
A
421 424anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 432first strand
Strand 2
A
519 525parallel
Strand 3
A
598 602parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
525 527parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 546first strand
Strand 2
A
557 560anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 731first strand
Strand 2
A
736 738anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 339first strand
Strand 2
B
370 375parallel
Strand 3
B
398 401parallel
Strand 4
B
704 709anti-parallel
Strand 5
B
666 669parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
421 424anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 431first strand
Strand 2
B
519 525parallel
Strand 3
B
598 602parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
435 437first strand
Strand 2
B
525 527parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 546first strand
Strand 2
B
557 560anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 731first strand
Strand 2
B
736 738anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il