Analysis of interatomic Contacts of Structural Units in PDB entry:
2PFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PFZ entry

There is 1 chain in PDB entry 2PFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 2PFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 32Right-handed alpha
Helix 2
2
A
47 49Right-handed 310
Helix 3
3
A
50 57Right-handed alpha
Helix 4
4
A
68 71Right-handed 310
Helix 5
5
A
74 82Right-handed 310
Helix 6
6
A
88 109Right-handed alpha
Helix 7
7
A
133 138Right-handed 310
Helix 8
8
A
146 156Right-handed alpha
Helix 9
9
A
164 166Right-handed 310
Helix 10
10
A
167 174Right-handed alpha
Helix 11
11
A
183 190Right-handed alpha
Helix 12
12
A
191 195Right-handed 310
Helix 13
13
A
215 220Right-handed alpha
Helix 14
14
A
222 258Right-handed alpha
Helix 15
15
A
266 289Right-handed alpha
Helix 16
16
A
289 301Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 2PFZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
36 40parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
208 214anti-parallel
Strand 3
A
112 119anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
141 144parallel
Strand 3
A
179 182parallel
Strand 4
A
124 127anti-parallel
Strand 5
A
198 200anti-parallel
Strand 6
A
261 263parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il