Analysis of interatomic Contacts of Structural Units in PDB entry:
2PG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PG8 entry

There are 3 chains in PDB entry 2PG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10ILE 426
B
 ASP 10ILE 426
C
 ASP 12ILE 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 2PG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 32Right-handed alpha
Helix 2
2
A
42 73Right-handed alpha
Helix 3
3
A
81 93Right-handed alpha
Helix 4
4
A
99 107Right-handed alpha
Helix 5
5
A
108 109Right-handed 310
Helix 6
6
A
110 114Right-handed 310
Helix 7
7
A
117 131Right-handed alpha
Helix 8
8
A
133 142Right-handed alpha
Helix 9
9
A
146 160Right-handed alpha
Helix 10
10
A
190 207Right-handed alpha
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
237 242Right-handed alpha
Helix 13
13
A
250 257Right-handed alpha
Helix 14
14
A
257 265Right-handed alpha
Helix 15
15
A
295 301Right-handed alpha
Helix 16
16
A
302 304Right-handed 310
Helix 17
17
A
328 346Right-handed alpha
Helix 18
18
A
356 362Right-handed 310
Helix 19
19
A
371 380Right-handed alpha
Helix 20
20
A
385 400Right-handed alpha
Helix 21
21
A
401 420Right-handed alpha
Helix 22
22
B
13 32Right-handed alpha
Helix 23
23
B
34 38Right-handed 310
Helix 24
24
B
39 73Right-handed alpha
Helix 25
25
B
81 93Right-handed alpha
Helix 26
26
B
99 109Right-handed alpha
Helix 27
27
B
117 131Right-handed alpha
Helix 28
28
B
133 144Right-handed alpha
Helix 29
29
B
146 160Right-handed alpha
Helix 30
30
B
190 207Right-handed alpha
Helix 31
31
B
236 243Right-handed alpha
Helix 32
32
B
252 257Right-handed alpha
Helix 33
33
B
257 265Right-handed alpha
Helix 34
34
B
295 302Right-handed alpha
Helix 35
35
B
328 347Right-handed alpha
Helix 36
36
B
356 362Right-handed 310
Helix 37
37
B
368 381Right-handed alpha
Helix 38
38
B
386 391Right-handed alpha
Helix 39
39
B
391 400Right-handed alpha
Helix 40
40
B
401 422Right-handed alpha
Helix 41
41
C
13 32Right-handed alpha
Helix 42
42
C
41 73Right-handed alpha
Helix 43
43
C
81 93Right-handed alpha
Helix 44
44
C
99 109Right-handed alpha
Helix 45
45
C
117 131Right-handed alpha
Helix 46
46
C
134 142Right-handed alpha
Helix 47
47
C
146 152Right-handed alpha
Helix 48
48
C
152 160Right-handed alpha
Helix 49
49
C
192 207Right-handed alpha
Helix 50
50
C
222 226Right-handed 310
Helix 51
51
C
236 243Right-handed alpha
Helix 52
52
C
250 257Right-handed alpha
Helix 53
53
C
257 265Right-handed alpha
Helix 54
54
C
295 301Right-handed alpha
Helix 55
55
C
328 347Right-handed alpha
Helix 56
56
C
356 362Right-handed 310
Helix 57
57
C
371 381Right-handed alpha
Helix 58
58
C
382 384Right-handed 310
Helix 59
59
C
385 400Right-handed alpha
Helix 60
60
C
401 421Right-handed alpha
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There are 9 sheets in PDB entry 2PG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
167 172anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
212 217parallel
Strand 5
A
285 289parallel
Strand 6
A
306 309parallel
Strand 7
A
365 366parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
280 281anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
314 316parallel
Strand 3
A
352 353anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
175 180anti-parallel
Strand 3
B
212 217parallel
Strand 4
B
285 289parallel
Strand 5
B
306 310parallel
Strand 6
B
365 367parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
292 294parallel
Strand 3
B
314 316parallel
Strand 4
B
351 353anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
280 281anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 163first strand
Strand 2
C
168 172anti-parallel
Strand 3
C
175 180anti-parallel
Strand 4
C
212 217parallel
Strand 5
C
285 289parallel
Strand 6
C
306 310parallel
Strand 7
C
365 367parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 233first strand
Strand 2
C
293 294parallel
Strand 3
C
314 316parallel
Strand 4
C
352 353anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
280 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il