Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PGC entry

There are 5 chains in PDB entry 2PGC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 206
B
 SER 2LEU 206
C
 ILE 4LEU 206
D
 SER 2LEU 206
E
 SER 2LEU 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2PGC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 37Right-handed alpha
Helix 2
2
A
64 78Right-handed alpha
Helix 3
3
A
78 88Right-handed alpha
Helix 4
4
A
123 125Right-handed 310
Helix 5
5
A
126 137Right-handed alpha
Helix 6
6
A
137 144Right-handed alpha
Helix 7
7
A
171 184Right-handed alpha
Helix 8
8
A
185 192Right-handed alpha
Helix 9
9
B
18 37Right-handed alpha
Helix 10
10
B
64 78Right-handed alpha
Helix 11
11
B
78 87Right-handed alpha
Helix 12
12
B
123 125Right-handed 310
Helix 13
13
B
126 137Right-handed alpha
Helix 14
14
B
137 144Right-handed alpha
Helix 15
15
B
171 183Right-handed alpha
Helix 16
16
B
185 192Right-handed alpha
Helix 17
17
C
18 37Right-handed alpha
Helix 18
18
C
64 78Right-handed alpha
Helix 19
19
C
78 88Right-handed alpha
Helix 20
20
C
123 125Right-handed 310
Helix 21
21
C
126 137Right-handed alpha
Helix 22
22
C
137 144Right-handed alpha
Helix 23
23
C
171 184Right-handed alpha
Helix 24
24
C
185 192Right-handed alpha
Helix 25
25
D
18 37Right-handed alpha
Helix 26
26
D
64 78Right-handed alpha
Helix 27
27
D
78 88Right-handed alpha
Helix 28
28
D
123 125Right-handed 310
Helix 29
29
D
126 137Right-handed alpha
Helix 30
30
D
137 144Right-handed alpha
Helix 31
31
D
171 184Right-handed alpha
Helix 32
32
D
185 192Right-handed alpha
Helix 33
33
E
18 37Right-handed alpha
Helix 34
34
E
64 78Right-handed alpha
Helix 35
35
E
78 87Right-handed alpha
Helix 36
36
E
123 125Right-handed 310
Helix 37
37
E
126 137Right-handed alpha
Helix 38
38
E
137 144Right-handed alpha
Helix 39
39
E
171 183Right-handed alpha
Helix 40
40
E
185 192Right-handed alpha
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There are 5 sheets in PDB entry 2PGC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 100first strand
Strand 2
A
5 14anti-parallel
Strand 3
A
56 62anti-parallel
Strand 4
A
42 47anti-parallel
Strand 5
A
196 205anti-parallel
Strand 6
A
114 121anti-parallel
Strand 7
A
163 169anti-parallel
Strand 8
A
148 153anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 100first strand
Strand 2
B
5 14anti-parallel
Strand 3
B
56 62anti-parallel
Strand 4
B
42 47anti-parallel
Strand 5
B
196 205anti-parallel
Strand 6
B
114 121anti-parallel
Strand 7
B
163 169anti-parallel
Strand 8
B
148 153anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 100first strand
Strand 2
C
5 14anti-parallel
Strand 3
C
56 62anti-parallel
Strand 4
C
42 47anti-parallel
Strand 5
C
196 205anti-parallel
Strand 6
C
114 121anti-parallel
Strand 7
C
163 169anti-parallel
Strand 8
C
148 153anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 100first strand
Strand 2
D
5 14anti-parallel
Strand 3
D
56 62anti-parallel
Strand 4
D
42 47anti-parallel
Strand 5
D
196 205anti-parallel
Strand 6
D
114 121anti-parallel
Strand 7
D
163 169anti-parallel
Strand 8
D
148 153anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 100first strand
Strand 2
E
5 14anti-parallel
Strand 3
E
56 62anti-parallel
Strand 4
E
42 47anti-parallel
Strand 5
E
196 205anti-parallel
Strand 6
E
114 121anti-parallel
Strand 7
E
163 169anti-parallel
Strand 8
E
148 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il