Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PGG entry

There is 1 chain in PDB entry 2PGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 31VAL 804
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 2PGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 57Right-handed alpha
Helix 2
2
A
75 79Right-handed alpha
Helix 3
3
A
82 87Right-handed alpha
Helix 4
4
A
127 141Right-handed alpha
Helix 5
5
A
145 161Right-handed alpha
Helix 6
6
A
168 184Right-handed alpha
Helix 7
7
A
191 195Right-handed 310
Helix 8
8
A
198 210Right-handed alpha
Helix 9
9
A
228 231Right-handed 310
Helix 10
10
A
259 263Right-handed 310
Helix 11
11
A
266 269Right-handed 310
Helix 12
12
A
270 290Right-handed alpha
Helix 13
13
A
298 310Right-handed alpha
Helix 14
14
A
311 313Right-handed 310
Helix 15
15
A
328 330Right-handed 310
Helix 16
16
A
341 357Right-handed alpha
Helix 17
17
A
380 391Right-handed alpha
Helix 18
18
A
419 424Right-handed 310
Helix 19
19
A
425 441Right-handed alpha
Helix 20
20
A
450 460Right-handed alpha
Helix 21
21
A
460 466Right-handed alpha
Helix 22
22
A
488 507Right-handed alpha
Helix 23
23
A
514 519Right-handed alpha
Helix 24
24
A
519 525Right-handed alpha
Helix 25
25
A
536 548Right-handed alpha
Helix 26
26
A
589 599Right-handed alpha
Helix 27
27
A
613 630Right-handed alpha
Helix 28
28
A
631 633Right-handed 310
Helix 29
29
A
634 654Right-handed alpha
Helix 30
30
A
658 663Right-handed alpha
Helix 31
31
A
664 670Right-handed 310
Helix 32
32
A
672 680Right-handed 310
Helix 33
33
A
686 695Right-handed alpha
Helix 34
34
A
712 722Right-handed alpha
Helix 35
35
A
729 742Right-handed alpha
Helix 36
36
A
746 761Right-handed alpha
Helix 37
37
A
768 783Right-handed alpha
Helix 38
38
A
792 803Right-handed alpha
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There are 8 sheets in PDB entry 2PGG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
105 106anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
96 99anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
323 326anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
245 247anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 339first strand
Strand 2
A
315 320anti-parallel
Strand 3
A
469 472parallel
Strand 4
A
475 478anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 400first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
411 417anti-parallel
Strand 4
A
528 534anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 443first strand
Strand 2
A
446 447anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 570first strand
Strand 2
A
573 577anti-parallel
Strand 3
A
584 588anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il