Analysis of interatomic Contacts of Structural Units in PDB entry:
2PGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PGK entry

There is 1 chain in PDB entry 2PGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 UNK 0UNK 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2PGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
I
A
34 50Right-handed alpha
Helix 2
II
A
75 87Right-handed alpha
Helix 3
III
A
99 109Right-handed alpha
Helix 4
IV
A
141 154Right-handed alpha
Helix 5
V
A
188 202Right-handed alpha
Helix 6
VI
A
217 229Right-handed alpha
Helix 7
VII
A
237 247Right-handed alpha
Helix 8
IIX
A
257 272Right-handed alpha
Helix 9
IX
A
313 326Right-handed alpha
Helix 10
X
A
343 361Right-handed alpha
Helix 11
XI
A
385 395Right-handed alpha
Helix 12
XII
A
398 404Right-handed alpha
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There are 2 sheets in PDB entry 2PGK. Click on sheet of interest to get list of strands forming it: 1, 2,

There are 6 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
112 118parallel
Strand 3
A
54 60parallel
Strand 4
A
15 20parallel
Strand 5
A
157 163parallel
Strand 6
A
182 187parallel
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There are 6 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 278first strand
Strand 2
A
230 236parallel
Strand 3
A
205 213parallel
Strand 4
A
327 333parallel
Strand 5
A
362 368parallel
Strand 6
A
380 384parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il