Analysis of interatomic Contacts of Structural Units in PDB entry:
2PH7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PH7 entry

There are 2 chains in PDB entry 2PH7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ASN 226
B
 GLY 0ASN 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2PH7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 13Right-handed alpha
Helix 2
2
A
20 37Right-handed alpha
Helix 3
3
A
38 43Right-handed 310
Helix 4
4
A
44 53Right-handed alpha
Helix 5
5
A
87 119Right-handed alpha
Helix 6
6
A
145 152Right-handed alpha
Helix 7
7
A
152 160Right-handed alpha
Helix 8
8
A
177 195Right-handed alpha
Helix 9
9
A
217 224Right-handed 310
Helix 10
10
B
1 13Right-handed alpha
Helix 11
11
B
20 37Right-handed alpha
Helix 12
12
B
38 43Right-handed 310
Helix 13
13
B
44 53Right-handed alpha
Helix 14
14
B
87 119Right-handed alpha
Helix 15
15
B
145 152Right-handed alpha
Helix 16
16
B
152 160Right-handed alpha
Helix 17
17
B
177 195Right-handed alpha
Helix 18
18
B
217 224Right-handed 310
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There are 4 sheets in PDB entry 2PH7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
76 80anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
129 133anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
166 172parallel
Strand 5
A
197 202parallel
Strand 6
A
207 212anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
76 80anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
129 133anti-parallel
Strand 3
B
138 143anti-parallel
Strand 4
B
166 172parallel
Strand 5
B
197 202parallel
Strand 6
B
207 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il