Analysis of interatomic Contacts of Structural Units in PDB entry:
2PJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PJD entry

There is 1 chain in PDB entry 2PJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3MSE 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2PJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 13Right-handed alpha
Helix 2
2
A
14 19Right-handed alpha
Helix 3
3
A
32 37Right-handed alpha
Helix 4
4
A
48 60Right-handed alpha
Helix 5
5
A
70 75Right-handed alpha
Helix 6
6
A
87 100Right-handed alpha
Helix 7
7
A
115 119Right-handed 310
Helix 8
8
A
120 126Right-handed alpha
Helix 9
9
A
154 159Right-handed 310
Helix 10
10
A
182 192Right-handed alpha
Helix 11
11
A
208 218Right-handed alpha
Helix 12
12
A
229 243Right-handed alpha
Helix 13
13
A
275 290Right-handed alpha
Helix 14
14
A
308 318Right-handed alpha
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There are 4 sheets in PDB entry 2PJD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
41 46parallel
Strand 3
A
22 27parallel
Strand 4
A
79 83parallel
Strand 5
A
107 113parallel
Strand 6
A
140 146anti-parallel
Strand 7
A
132 134anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
167 171anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
248 251parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 267first strand
Strand 2
A
293 304parallel
Strand 3
A
329 335anti-parallel
Strand 4
A
321 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il