Analysis of interatomic Contacts of Structural Units in PDB entry:
2PJT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PJT entry

There are 4 chains in PDB entry 2PJT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 79PRO 243
B
 TYR 79PRO 243
C
 TYR 79PRO 243
D
 TYR 79PRO 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2PJT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
105 123Right-handed alpha
Helix 2
2
A
191 203Right-handed alpha
Helix 3
3
A
230 242Right-handed alpha
Helix 4
4
B
105 122Right-handed alpha
Helix 5
5
B
191 204Right-handed alpha
Helix 6
6
B
230 241Right-handed alpha
Helix 7
7
C
105 122Right-handed alpha
Helix 8
8
C
191 204Right-handed alpha
Helix 9
9
C
230 242Right-handed alpha
Helix 10
10
D
105 122Right-handed alpha
Helix 11
11
D
191 203Right-handed alpha
Helix 12
12
D
230 242Right-handed alpha
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There are 9 sheets in PDB entry 2PJT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
92 97parallel
Strand 3
A
138 143parallel
Strand 4
A
174 177parallel
Strand 5
A
161 163anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
189 190parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
205 206anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
92 97parallel
Strand 3
B
138 143parallel
Strand 4
B
174 177parallel
Strand 5
B
161 163anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
189 190parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
92 97parallel
Strand 3
C
138 143parallel
Strand 4
C
174 177parallel
Strand 5
C
161 163anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 183first strand
Strand 2
C
189 190parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 130first strand
Strand 2
D
92 97parallel
Strand 3
D
138 143parallel
Strand 4
D
174 177parallel
Strand 5
D
161 163anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
182 183first strand
Strand 2
D
189 190parallel
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