Analysis of interatomic Contacts of Structural Units in PDB entry:
2PJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PJU entry

There are 4 chains in PDB entry 2PJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11SER 196
B
 LYS 11LEU 197
C
 LYS 11ARG 198
D
 LYS 11HIS 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2PJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
45 57Right-handed alpha
Helix 3
3
A
69 77Right-handed alpha
Helix 4
4
A
89 100Right-handed alpha
Helix 5
5
A
116 127Right-handed alpha
Helix 6
6
A
137 151Right-handed alpha
Helix 7
7
A
159 169Right-handed alpha
Helix 8
8
A
178 196Right-handed alpha
Helix 9
9
B
19 34Right-handed alpha
Helix 10
10
B
45 58Right-handed alpha
Helix 11
11
B
69 79Right-handed alpha
Helix 12
12
B
89 101Right-handed alpha
Helix 13
13
B
118 125Right-handed alpha
Helix 14
14
B
137 150Right-handed alpha
Helix 15
15
B
159 170Right-handed alpha
Helix 16
16
B
178 197Right-handed alpha
Helix 17
17
C
19 34Right-handed alpha
Helix 18
18
C
45 60Right-handed alpha
Helix 19
19
C
69 79Right-handed alpha
Helix 20
20
C
89 101Right-handed alpha
Helix 21
21
C
118 127Right-handed alpha
Helix 22
22
C
137 151Right-handed alpha
Helix 23
23
C
159 169Right-handed alpha
Helix 24
24
C
178 198Right-handed alpha
Helix 25
25
D
21 31Right-handed alpha
Helix 26
26
D
45 58Right-handed alpha
Helix 27
27
D
69 77Right-handed alpha
Helix 28
28
D
89 100Right-handed alpha
Helix 29
29
D
116 127Right-handed alpha
Helix 30
30
D
137 151Right-handed alpha
Helix 31
31
D
159 169Right-handed alpha
Helix 32
32
D
178 205Right-handed alpha
Helix 33
33
D
211 216Right-handed alpha
Helix 34
34
D
217 222Right-handed 310
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There are 8 sheets in PDB entry 2PJU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 42first strand
Strand 2
A
13 17parallel
Strand 3
A
64 68parallel
Strand 4
A
83 86parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
107 112parallel
Strand 3
A
155 158parallel
Strand 4
A
172 175parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 42first strand
Strand 2
B
13 17parallel
Strand 3
B
64 68parallel
Strand 4
B
83 86parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 135first strand
Strand 2
B
107 112parallel
Strand 3
B
155 158parallel
Strand 4
B
172 175parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 42first strand
Strand 2
C
13 17parallel
Strand 3
C
64 68parallel
Strand 4
C
83 86parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 135first strand
Strand 2
C
106 112parallel
Strand 3
C
155 158parallel
Strand 4
C
172 175parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 42first strand
Strand 2
D
13 17parallel
Strand 3
D
64 68parallel
Strand 4
D
83 86parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 135first strand
Strand 2
D
106 112parallel
Strand 3
D
155 158parallel
Strand 4
D
172 175parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il