Analysis of interatomic Contacts of Structural Units in PDB entry:
2PJZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PJZ entry

There is 1 chain in PDB entry 2PJZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2PJZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 51Right-handed alpha
Helix 2
2
A
68 70Right-handed 310
Helix 3
3
A
80 84Right-handed 310
Helix 4
4
A
89 101Right-handed alpha
Helix 5
5
A
104 115Right-handed alpha
Helix 6
6
A
118 124Right-handed 310
Helix 7
7
A
125 129Right-handed 310
Helix 8
8
A
130 145Right-handed alpha
Helix 9
9
A
160 174Right-handed alpha
Helix 10
10
A
184 191Right-handed 310
Helix 11
11
A
210 215Right-handed alpha
Helix 12
12
A
249 251Right-handed 310
Helix 13
13
A
255 261Right-handed alpha
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There are 3 sheets in PDB entry 2PJZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 28first strand
Strand 2
A
2 14anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
65 66anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
149 153parallel
Strand 3
A
177 182parallel
Strand 4
A
32 36parallel
Strand 5
A
195 200parallel
Strand 6
A
203 209anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
246 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il