Analysis of interatomic Contacts of Structural Units in PDB entry:
2PLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PLM entry

There is 1 chain in PDB entry 2PLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2PLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 64Right-handed 310
Helix 2
2
A
71 78Right-handed alpha
Helix 3
3
A
79 85Right-handed alpha
Helix 4
4
A
88 105Right-handed alpha
Helix 5
5
A
117 129Right-handed alpha
Helix 6
6
A
147 160Right-handed alpha
Helix 7
7
A
161 164Right-handed 310
Helix 8
8
A
179 194Right-handed alpha
Helix 9
9
A
211 216Right-handed alpha
Helix 10
10
A
233 235Right-handed 310
Helix 11
11
A
236 241Right-handed alpha
Helix 12
12
A
250 257Right-handed alpha
Helix 13
13
A
263 270Right-handed alpha
Helix 14
14
A
288 302Right-handed alpha
Helix 15
15
A
309 318Right-handed alpha
Helix 16
16
A
318 326Right-handed alpha
Helix 17
17
A
347 351Right-handed 310
Helix 18
18
A
352 354Right-handed 310
Helix 19
19
A
355 363Right-handed alpha
Helix 20
20
A
388 404Right-handed alpha
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There are 4 sheets in PDB entry 2PLM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
40 41parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
45 49parallel
Strand 5
A
340 344anti-parallel
Strand 6
A
370 373anti-parallel
Strand 7
A
376 380anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
108 115parallel
Strand 3
A
131 138parallel
Strand 4
A
166 172parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
224 228parallel
Strand 3
A
245 249parallel
Strand 4
A
273 276parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il