Analysis of interatomic Contacts of Structural Units in PDB entry:
2PLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PLY entry

There are 4 chains in PDB entry 2PLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 13 C 35
E
 G 13 C 35
A
 GLU 392VAL 632
B
 SER 436GLY 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2PLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
436 458Right-handed alpha
Helix 2
2
A
466 474Right-handed alpha
Helix 3
3
A
478 492Right-handed alpha
Helix 4
4
A
512 530Right-handed alpha
Helix 5
5
A
535 544Right-handed alpha
Helix 6
6
A
546 561Right-handed alpha
Helix 7
7
A
574 590Right-handed alpha
Helix 8
8
A
594 602Right-handed alpha
Helix 9
9
A
605 619Right-handed alpha
Helix 10
10
B
437 458Right-handed alpha
Helix 11
11
B
466 474Right-handed alpha
Helix 12
12
B
478 492Right-handed alpha
Helix 13
13
B
512 530Right-handed alpha
Helix 14
14
B
535 543Right-handed alpha
Helix 15
15
B
546 561Right-handed alpha
Helix 16
16
B
574 589Right-handed alpha
Helix 17
17
B
594 603Right-handed alpha
Helix 18
18
B
605 619Right-handed alpha
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There are 7 sheets in PDB entry 2PLY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
434 435anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
501 504anti-parallel
Strand 3
A
495 497anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 567first strand
Strand 2
A
570 573anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 625first strand
Strand 2
A
628 631anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 465first strand
Strand 2
B
501 504anti-parallel
Strand 3
B
495 497anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
563 565first strand
Strand 2
B
571 573anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 625first strand
Strand 2
B
628 631anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il