Analysis of interatomic Contacts of Structural Units in PDB entry:
2PM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2PM6 entry

There are 4 chains in PDB entry 2PM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 373	GLY 745
B	VAL 2	ALA 292
C	ALA 373	GLY 745
D	VAL 2	HIS 296

There are 47 helices in PDB entry 2PM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	388	390	Right-handed 310
Helix 2	2	A	415	425	Right-handed alpha
Helix 3	3	A	427	437	Right-handed alpha
Helix 4	4	A	440	457	Right-handed alpha
Helix 5	5	A	457	467	Right-handed alpha
Helix 6	6	A	508	520	Right-handed alpha
Helix 7	7	A	522	532	Right-handed alpha
Helix 8	8	A	535	544	Right-handed alpha
Helix 9	9	A	550	555	Right-handed alpha
Helix 10	10	A	555	561	Right-handed alpha
Helix 11	11	A	567	578	Right-handed alpha
Helix 12	12	A	581	588	Right-handed alpha
Helix 13	13	A	589	591	Right-handed 310
Helix 14	14	A	592	604	Right-handed alpha
Helix 15	15	A	607	624	Right-handed alpha
Helix 16	16	A	627	639	Right-handed alpha
Helix 17	17	A	640	651	Right-handed alpha
Helix 18	18	A	651	661	Right-handed alpha
Helix 19	19	A	665	686	Right-handed alpha
Helix 20	20	A	696	712	Right-handed alpha
Helix 21	21	A	715	726	Right-handed alpha
Helix 22	22	A	730	745	Right-handed alpha
Helix 23	23	B	63	67	Right-handed 310
Helix 24	24	C	415	425	Right-handed alpha
Helix 25	25	C	427	437	Right-handed alpha
Helix 26	26	C	440	456	Right-handed alpha
Helix 27	27	C	456	467	Right-handed alpha
Helix 28	28	C	508	520	Right-handed alpha
Helix 29	29	C	522	533	Right-handed alpha
Helix 30	30	C	535	544	Right-handed alpha
Helix 31	31	C	548	553	Right-handed alpha
Helix 32	32	C	553	564	Right-handed alpha
Helix 33	33	C	567	578	Right-handed alpha
Helix 34	34	C	581	587	Right-handed alpha
Helix 35	35	C	589	591	Right-handed 310
Helix 36	36	C	592	604	Right-handed alpha
Helix 37	37	C	607	625	Right-handed alpha
Helix 38	38	C	627	638	Right-handed alpha
Helix 39	39	C	640	651	Right-handed alpha
Helix 40	40	C	651	662	Right-handed alpha
Helix 41	41	C	665	688	Right-handed alpha
Helix 42	42	C	696	713	Right-handed alpha
Helix 43	43	C	715	724	Right-handed alpha
Helix 44	44	C	730	745	Right-handed alpha
Helix 45	45	D	63	67	Right-handed 310
Helix 46	46	D	109	113	Right-handed 310
Helix 47	47	D	167	170	Right-handed 310

There are 14 sheets in PDB entry 2PM6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	391	395	anti-parallel
Strand 3	A	402	405	anti-parallel
Strand 4	B	3	4	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	15	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	32	38	anti-parallel
Strand 4	B	43	50	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	79	85	anti-parallel
Strand 4	B	88	95	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	116	120	anti-parallel
Strand 3	B	124	128	anti-parallel
Strand 4	B	139	142	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	153	first strand
Strand 2	B	172	177	anti-parallel
Strand 3	B	182	188	anti-parallel
Strand 4	B	193	200	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	212	first strand
Strand 2	B	220	226	anti-parallel
Strand 3	B	231	236	anti-parallel
Strand 4	B	244	247	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	269	272	anti-parallel
Strand 3	B	278	283	anti-parallel
Strand 4	B	289	291	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	387	first strand
Strand 2	C	391	395	anti-parallel
Strand 3	C	402	405	anti-parallel
Strand 4	D	3	4	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	23	28	anti-parallel
Strand 3	D	33	38	anti-parallel
Strand 4	D	43	49	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	61	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	89	95	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	107	first strand
Strand 2	D	116	120	anti-parallel
Strand 3	D	124	128	anti-parallel
Strand 4	D	139	142	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	153	first strand
Strand 2	D	172	177	anti-parallel
Strand 3	D	182	188	anti-parallel
Strand 4	D	193	200	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	212	first strand
Strand 2	D	220	226	anti-parallel
Strand 3	D	233	236	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	261	first strand
Strand 2	D	269	273	anti-parallel
Strand 3	D	278	283	anti-parallel
Strand 4	D	289	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2PM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2PM6