Analysis of interatomic Contacts of Structural Units in PDB entry:
2PML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PML entry

There is 1 chain in PDB entry 2PML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY -4LEU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2PML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
0 6Right-handed alpha
Helix 2
2
X
59 63Right-handed alpha
Helix 3
3
X
81 93Right-handed alpha
Helix 4
4
X
144 165Right-handed alpha
Helix 5
5
X
174 176Right-handed 310
Helix 6
6
X
208 212Right-handed 310
Helix 7
7
X
213 218Right-handed 310
Helix 8
8
X
225 243Right-handed alpha
Helix 9
9
X
253 261Right-handed alpha
Helix 10
10
X
291 302Right-handed alpha
Helix 11
11
X
305 309Right-handed 310
Helix 12
12
X
311 317Right-handed alpha
Helix 13
13
X
318 322Right-handed 310
Helix 14
14
X
325 340Right-handed alpha
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There are 6 sheets in PDB entry 2PML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
11 13first strand
Strand 2
X
105 108parallel
Strand 3
X
112 118anti-parallel
Strand 4
X
50 58anti-parallel
Strand 5
X
42 47anti-parallel
Strand 6
X
28 35anti-parallel
Strand 7
X
23 25anti-parallel
Strand 8
X
16 18anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
66 68first strand
Strand 2
X
78 80anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
127 128first strand
Strand 2
X
132 133anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
168 169first strand
Strand 2
X
195 196anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
178 180first strand
Strand 2
X
186 188anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
201 202first strand
Strand 2
X
223 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il