Analysis of interatomic Contacts of Structural Units in PDB entry:
2PMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PMS entry

There are 4 chains in PDB entry 2PMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3ARG 333
B
 ARG 3ARG 333
C
 GLY 164GLU 288
D
 GLY 164GLU 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2PMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 30Right-handed alpha
Helix 2
2
A
42 52Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
126 134Right-handed alpha
Helix 5
5
A
135 137Right-handed 310
Helix 6
6
A
145 154Right-handed alpha
Helix 7
7
A
167 171Right-handed 310
Helix 8
8
A
177 181Right-handed 310
Helix 9
9
A
191 202Right-handed alpha
Helix 10
10
A
213 219Right-handed alpha
Helix 11
11
A
221 226Right-handed alpha
Helix 12
12
A
241 246Right-handed 310
Helix 13
13
A
264 280Right-handed alpha
Helix 14
14
A
316 333Right-handed alpha
Helix 15
15
B
13 30Right-handed alpha
Helix 16
16
B
42 52Right-handed alpha
Helix 17
17
B
61 70Right-handed alpha
Helix 18
18
B
106 110Right-handed 310
Helix 19
19
B
126 134Right-handed alpha
Helix 20
20
B
135 137Right-handed 310
Helix 21
21
B
145 154Right-handed alpha
Helix 22
22
B
167 171Right-handed 310
Helix 23
23
B
177 181Right-handed 310
Helix 24
24
B
191 202Right-handed alpha
Helix 25
25
B
213 219Right-handed alpha
Helix 26
26
B
221 226Right-handed alpha
Helix 27
27
B
242 246Right-handed 310
Helix 28
28
B
264 280Right-handed alpha
Helix 29
29
B
316 333Right-handed alpha
Helix 30
30
C
167 173Right-handed alpha
Helix 31
31
C
173 192Right-handed alpha
Helix 32
32
C
210 249Right-handed alpha
Helix 33
33
C
257 286Right-handed alpha
Helix 34
34
D
168 173Right-handed alpha
Helix 35
35
D
173 195Right-handed alpha
Helix 36
36
D
211 249Right-handed alpha
Helix 37
37
D
257 286Right-handed alpha
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There are 10 sheets in PDB entry 2PMS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
35 39parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
75 85anti-parallel
Strand 4
A
88 90anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
75 85anti-parallel
Strand 4
A
307 310anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
114 117parallel
Strand 3
A
207 211parallel
Strand 4
A
92 100anti-parallel
Strand 5
A
228 232anti-parallel
Strand 6
A
236 239anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
114 117parallel
Strand 3
A
207 211parallel
Strand 4
A
92 100anti-parallel
Strand 5
A
249 252anti-parallel
Strand 6
D
166 167anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
35 39parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
255 259anti-parallel
Strand 3
B
75 84anti-parallel
Strand 4
B
89 90anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
255 259anti-parallel
Strand 3
B
75 84anti-parallel
Strand 4
B
307 310anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
114 117parallel
Strand 3
B
207 211parallel
Strand 4
B
92 100anti-parallel
Strand 5
B
228 231anti-parallel
Strand 6
B
237 239anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 158first strand
Strand 2
B
114 117parallel
Strand 3
B
207 211parallel
Strand 4
B
92 100anti-parallel
Strand 5
B
249 252anti-parallel
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