Analysis of interatomic Contacts of Structural Units in PDB entry:
2PMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PMT entry

There are 4 chains in PDB entry 2PMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 201
B
 MET 1ILE 201
C
 MET 1ILE 201
D
 MET 1ILE 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2PMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed 310
Helix 2
2
A
43 45Right-handed 310
Helix 3
3
A
66 76Right-handed alpha
Helix 4
4
A
78 80Right-handed 310
Helix 5
5
A
89 103Right-handed alpha
Helix 6
6
A
106 113Right-handed alpha
Helix 7
7
A
119 141Right-handed alpha
Helix 8
8
A
153 163Right-handed alpha
Helix 9
9
A
165 168Right-handed 310
Helix 10
10
A
176 187Right-handed alpha
Helix 11
11
A
189 198Right-handed alpha
Helix 12
12
B
10 21Right-handed 310
Helix 13
13
B
43 45Right-handed 310
Helix 14
14
B
66 76Right-handed alpha
Helix 15
15
B
78 80Right-handed 310
Helix 16
16
B
89 103Right-handed alpha
Helix 17
17
B
106 113Right-handed alpha
Helix 18
18
B
119 141Right-handed alpha
Helix 19
19
B
153 163Right-handed alpha
Helix 20
20
B
165 168Right-handed 310
Helix 21
21
B
176 187Right-handed alpha
Helix 22
22
B
189 198Right-handed alpha
Helix 23
23
C
10 21Right-handed 310
Helix 24
24
C
43 45Right-handed 310
Helix 25
25
C
66 76Right-handed alpha
Helix 26
26
C
78 80Right-handed 310
Helix 27
27
C
89 103Right-handed alpha
Helix 28
28
C
106 113Right-handed alpha
Helix 29
29
C
119 141Right-handed alpha
Helix 30
30
C
153 163Right-handed alpha
Helix 31
31
C
165 168Right-handed 310
Helix 32
32
C
176 187Right-handed alpha
Helix 33
33
C
189 198Right-handed alpha
Helix 34
34
D
10 21Right-handed 310
Helix 35
35
D
43 45Right-handed 310
Helix 36
36
D
66 76Right-handed alpha
Helix 37
37
D
78 80Right-handed 310
Helix 38
38
D
89 103Right-handed alpha
Helix 39
39
D
106 113Right-handed alpha
Helix 40
40
D
119 141Right-handed alpha
Helix 41
41
D
153 163Right-handed alpha
Helix 42
42
D
165 168Right-handed 310
Helix 43
43
D
176 187Right-handed alpha
Helix 44
44
D
189 198Right-handed alpha
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There are 4 sheets in PDB entry 2PMT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
2 5parallel
Strand 3
A
54 56anti-parallel
Strand 4
A
62 64anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
2 5parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
62 64anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 29first strand
Strand 2
C
2 5parallel
Strand 3
C
54 56anti-parallel
Strand 4
C
62 64anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 29first strand
Strand 2
D
2 5parallel
Strand 3
D
54 56anti-parallel
Strand 4
D
62 64anti-parallel
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