Analysis of interatomic Contacts of Structural Units in PDB entry:
2PMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PMU entry

There are 6 chains in PDB entry 2PMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 149PRO 246
B
 LYS 144PRO 246
C
 ASN 148PRO 246
D
 VAL 149PRO 246
E
 LYS 144PRO 246
F
 ASN 148PRO 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 2PMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
175 188Right-handed alpha
Helix 2
2
A
194 203Right-handed alpha
Helix 3
3
A
212 226Right-handed alpha
Helix 4
4
B
175 188Right-handed alpha
Helix 5
5
B
194 203Right-handed alpha
Helix 6
6
B
210 226Right-handed alpha
Helix 7
7
C
175 188Right-handed alpha
Helix 8
8
C
194 203Right-handed alpha
Helix 9
9
C
211 226Right-handed alpha
Helix 10
10
D
175 188Right-handed alpha
Helix 11
11
D
194 203Right-handed alpha
Helix 12
12
D
211 226Right-handed alpha
Helix 13
13
E
175 188Right-handed alpha
Helix 14
14
E
194 203Right-handed alpha
Helix 15
15
E
210 226Right-handed alpha
Helix 16
16
F
175 188Right-handed alpha
Helix 17
17
F
194 203Right-handed alpha
Helix 18
18
F
210 226Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 2PMU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
165 167anti-parallel
Strand 4
A
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
156 159anti-parallel
Strand 3
B
165 167anti-parallel
Strand 4
B
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 153first strand
Strand 2
C
156 159anti-parallel
Strand 3
C
164 167anti-parallel
Strand 4
C
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 236first strand
Strand 2
C
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 153first strand
Strand 2
D
156 159anti-parallel
Strand 3
D
165 167anti-parallel
Strand 4
D
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
233 236first strand
Strand 2
D
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 153first strand
Strand 2
E
156 159anti-parallel
Strand 3
E
165 167anti-parallel
Strand 4
E
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
233 236first strand
Strand 2
E
240 243anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
150 153first strand
Strand 2
F
156 159anti-parallel
Strand 3
F
164 167anti-parallel
Strand 4
F
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
233 236first strand
Strand 2
F
240 243anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il