Analysis of interatomic Contacts of Structural Units in PDB entry:
2PMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PMV entry

There are 4 chains in PDB entry 2PMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 7TYR 399
B
 SER 7ASP 273
C
 SER 7TYR 399
D
 SER 7ASP 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 2PMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
50 63Right-handed alpha
Helix 4
4
A
65 69Right-handed 310
Helix 5
5
A
70 84Right-handed alpha
Helix 6
6
A
89 101Right-handed alpha
Helix 7
7
A
110 113Right-handed 310
Helix 8
8
A
114 128Right-handed alpha
Helix 9
9
A
128 146Right-handed alpha
Helix 10
10
A
151 167Right-handed alpha
Helix 11
11
A
176 193Right-handed alpha
Helix 12
12
A
204 218Right-handed alpha
Helix 13
13
A
227 240Right-handed alpha
Helix 14
14
A
246 258Right-handed alpha
Helix 15
15
A
261 268Right-handed 310
Helix 16
16
A
324 335Right-handed alpha
Helix 17
17
A
361 364Right-handed 310
Helix 18
18
B
14 28Right-handed alpha
Helix 19
19
B
36 47Right-handed alpha
Helix 20
20
B
50 62Right-handed alpha
Helix 21
21
B
70 84Right-handed alpha
Helix 22
22
B
89 101Right-handed alpha
Helix 23
23
B
110 113Right-handed 310
Helix 24
24
B
114 128Right-handed alpha
Helix 25
25
B
128 146Right-handed alpha
Helix 26
26
B
151 167Right-handed alpha
Helix 27
27
B
176 193Right-handed alpha
Helix 28
28
B
204 206Right-handed 310
Helix 29
29
B
207 218Right-handed alpha
Helix 30
30
B
227 241Right-handed alpha
Helix 31
31
B
246 252Right-handed alpha
Helix 32
32
B
253 258Right-handed alpha
Helix 33
33
B
261 268Right-handed 310
Helix 34
34
C
14 27Right-handed alpha
Helix 35
35
C
36 47Right-handed alpha
Helix 36
36
C
50 63Right-handed alpha
Helix 37
37
C
65 69Right-handed 310
Helix 38
38
C
70 84Right-handed alpha
Helix 39
39
C
89 100Right-handed alpha
Helix 40
40
C
110 113Right-handed 310
Helix 41
41
C
114 146Right-handed alpha
Helix 42
42
C
151 167Right-handed alpha
Helix 43
43
C
176 193Right-handed alpha
Helix 44
44
C
204 218Right-handed alpha
Helix 45
45
C
227 241Right-handed alpha
Helix 46
46
C
246 258Right-handed alpha
Helix 47
47
C
261 268Right-handed 310
Helix 48
48
C
324 335Right-handed alpha
Helix 49
49
C
361 364Right-handed 310
Helix 50
50
D
14 28Right-handed alpha
Helix 51
51
D
36 47Right-handed alpha
Helix 52
52
D
50 62Right-handed alpha
Helix 53
53
D
70 83Right-handed alpha
Helix 54
54
D
89 101Right-handed alpha
Helix 55
55
D
110 113Right-handed 310
Helix 56
56
D
114 128Right-handed alpha
Helix 57
57
D
128 146Right-handed alpha
Helix 58
58
D
151 167Right-handed alpha
Helix 59
59
D
176 193Right-handed alpha
Helix 60
60
D
207 218Right-handed alpha
Helix 61
61
D
227 241Right-handed alpha
Helix 62
62
D
246 252Right-handed alpha
Helix 63
63
D
253 258Right-handed alpha
Helix 64
64
D
261 268Right-handed 310
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There are 6 sheets in PDB entry 2PMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
294 301anti-parallel
Strand 3
A
315 318anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
294 301anti-parallel
Strand 3
A
391 398parallel
Strand 4
A
366 372anti-parallel
Strand 5
A
375 376anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 346first strand
Strand 2
A
349 355anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 312first strand
Strand 2
C
294 301anti-parallel
Strand 3
C
315 318anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
311 312first strand
Strand 2
C
294 301anti-parallel
Strand 3
C
391 398parallel
Strand 4
C
366 372anti-parallel
Strand 5
C
375 376anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
341 346first strand
Strand 2
C
349 355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il