Analysis of interatomic Contacts of Structural Units in PDB entry:
2PN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PN1 entry

There is 1 chain in PDB entry 2PN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ARG 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2PN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
39 45Right-handed 310
Helix 3
3
A
58 71Right-handed alpha
Helix 4
4
A
79 89Right-handed alpha
Helix 5
5
A
89 95Right-handed alpha
Helix 6
6
A
104 113Right-handed alpha
Helix 7
7
A
113 125Right-handed alpha
Helix 8
8
A
134 144Right-handed alpha
Helix 9
9
A
231 243Right-handed alpha
Helix 10
10
A
274 281Right-handed alpha
Helix 11
11
A
284 294Right-handed alpha
Helix 12
12
A
321 326Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 2PN1. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
29 34parallel
Strand 3
A
5 9parallel
Strand 4
A
74 77parallel
Strand 5
A
99 100parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
151 155anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 268first strand
Strand 2
A
249 258anti-parallel
Strand 3
A
192 200anti-parallel
Strand 4
A
207 219anti-parallel
Strand 5
A
222 229anti-parallel
Strand 6
A
310 312anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il