Analysis of interatomic Contacts of Structural Units in PDB entry:
2PN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PN5 entry

There is 1 chain in PDB entry 2PN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLY 1318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2PN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
214 217Right-handed 310
Helix 2
2
A
349 351Right-handed 310
Helix 3
3
A
462 466Right-handed 310
Helix 4
4
A
491 494Right-handed 310
Helix 5
5
A
531 537Right-handed alpha
Helix 6
6
A
542 552Right-handed alpha
Helix 7
7
A
563 569Right-handed alpha
Helix 8
8
A
705 707Right-handed 310
Helix 9
9
A
821 827Right-handed alpha
Helix 10
10
A
840 845Right-handed 310
Helix 11
11
A
846 859Right-handed alpha
Helix 12
12
A
863 882Right-handed alpha
Helix 13
13
A
883 885Right-handed 310
Helix 14
14
A
900 915Right-handed alpha
Helix 15
15
A
922 936Right-handed alpha
Helix 16
16
A
951 956Right-handed alpha
Helix 17
17
A
961 974Right-handed alpha
Helix 18
18
A
975 982Right-handed alpha
Helix 19
19
A
982 997Right-handed alpha
Helix 20
20
A
998 1000Right-handed 310
Helix 21
21
A
1002 1017Right-handed alpha
Helix 22
22
A
1020 1031Right-handed alpha
Helix 23
23
A
1047 1062Right-handed alpha
Helix 24
24
A
1064 1077Right-handed alpha
Helix 25
25
A
1087 1106Right-handed alpha
Helix 26
26
A
1303 1308Right-handed alpha
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There are 21 sheets in PDB entry 2PN5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 65first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
2 6anti-parallel
Strand 4
A
570 574anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
88 95parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
28 35anti-parallel
Strand 5
A
48 55anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 106first strand
Strand 2
A
116 125anti-parallel
Strand 3
A
161 167anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
186 195parallel
Strand 3
A
175 183anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
148 156anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 209first strand
Strand 2
A
219 228anti-parallel
Strand 3
A
260 266anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 258first strand
Strand 2
A
235 244anti-parallel
Strand 3
A
276 287anti-parallel
Strand 4
A
293 303anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 313first strand
Strand 2
A
324 331anti-parallel
Strand 3
A
363 368anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 357first strand
Strand 2
A
342 347anti-parallel
Strand 3
A
376 382anti-parallel
Strand 4
A
388 394anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 408first strand
Strand 2
A
417 428anti-parallel
Strand 3
A
452 460anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 447first strand
Strand 2
A
431 436anti-parallel
Strand 3
A
468 477anti-parallel
Strand 4
A
480 489anti-parallel
Strand 5
A
579 580parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
511 517anti-parallel
Strand 3
A
624 630anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
523 530anti-parallel
Strand 3
A
636 646anti-parallel
Strand 4
A
650 653anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 618first strand
Strand 2
A
523 530anti-parallel
Strand 3
A
636 646anti-parallel
Strand 4
A
658 662anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 671first strand
Strand 2
A
681 690anti-parallel
Strand 3
A
733 741anti-parallel
Strand 4
A
709 711anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 671first strand
Strand 2
A
681 690anti-parallel
Strand 3
A
1273 1274anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 677first strand
Strand 2
A
761 771parallel
Strand 3
A
745 754anti-parallel
Strand 4
A
696 703anti-parallel
Strand 5
A
720 727anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
779 798first strand
Strand 2
A
1146 1164anti-parallel
Strand 3
A
1111 1118anti-parallel
Strand 4
A
1121 1127anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
779 798first strand
Strand 2
A
1146 1164anti-parallel
Strand 3
A
811 817anti-parallel
Strand 4
A
1138 1139anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1035first strand
Strand 2
A
1040 1042anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1172 1174first strand
Strand 2
A
1288 1297anti-parallel
Strand 3
A
1279 1285anti-parallel
Strand 4
A
1211 1216anti-parallel
Strand 5
A
1248 1253anti-parallel
Strand 6
A
1239 1243anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1176 1183first strand
Strand 2
A
1190 1199anti-parallel
Strand 3
A
1261 1269anti-parallel
Strand 4
A
1221 1229anti-parallel
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