Analysis of interatomic Contacts of Structural Units in PDB entry:
2PN8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2PN8 entry

There are 10 chains in PDB entry 2PN8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 79	LYS 269
B	TYR 79	LYS 269
C	TYR 79	LYS 269
D	TYR 79	LYS 269
E	TYR 79	LYS 269
F	TYR 79	LYS 269
G	TYR 79	LYS 269
H	TYR 79	ASP 268
I	TYR 79	ASP 268
J	TYR 79	LYS 269

There are 80 helices in PDB entry 2PN8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	104	107	Right-handed 310
Helix 2	2	A	122	134	Right-handed alpha
Helix 3	3	A	134	140	Right-handed alpha
Helix 4	4	A	152	161	Right-handed alpha
Helix 5	5	A	163	167	Right-handed 310
Helix 6	6	A	182	188	Right-handed alpha
Helix 7	7	A	224	242	Right-handed alpha
Helix 8	8	A	262	268	Right-handed alpha
Helix 9	9	B	104	107	Right-handed 310
Helix 10	10	B	122	134	Right-handed alpha
Helix 11	11	B	134	140	Right-handed alpha
Helix 12	12	B	152	161	Right-handed alpha
Helix 13	13	B	163	167	Right-handed 310
Helix 14	14	B	182	188	Right-handed alpha
Helix 15	15	B	224	242	Right-handed alpha
Helix 16	16	B	263	269	Right-handed alpha
Helix 17	17	C	104	107	Right-handed 310
Helix 18	18	C	122	134	Right-handed alpha
Helix 19	19	C	135	140	Right-handed alpha
Helix 20	20	C	152	161	Right-handed alpha
Helix 21	21	C	163	167	Right-handed 310
Helix 22	22	C	182	188	Right-handed alpha
Helix 23	23	C	224	242	Right-handed alpha
Helix 24	24	C	262	268	Right-handed alpha
Helix 25	25	D	104	107	Right-handed 310
Helix 26	26	D	122	134	Right-handed alpha
Helix 27	27	D	134	140	Right-handed alpha
Helix 28	28	D	152	161	Right-handed alpha
Helix 29	29	D	163	167	Right-handed 310
Helix 30	30	D	182	188	Right-handed alpha
Helix 31	31	D	224	242	Right-handed alpha
Helix 32	32	D	262	268	Right-handed alpha
Helix 33	33	E	104	107	Right-handed 310
Helix 34	34	E	122	134	Right-handed alpha
Helix 35	35	E	134	140	Right-handed alpha
Helix 36	36	E	152	161	Right-handed alpha
Helix 37	37	E	163	167	Right-handed 310
Helix 38	38	E	182	188	Right-handed alpha
Helix 39	39	E	224	242	Right-handed alpha
Helix 40	40	E	263	268	Right-handed alpha
Helix 41	41	F	104	107	Right-handed 310
Helix 42	42	F	122	134	Right-handed alpha
Helix 43	43	F	135	140	Right-handed alpha
Helix 44	44	F	152	161	Right-handed alpha
Helix 45	45	F	163	167	Right-handed 310
Helix 46	46	F	182	188	Right-handed alpha
Helix 47	47	F	224	242	Right-handed alpha
Helix 48	48	F	263	268	Right-handed alpha
Helix 49	49	G	104	107	Right-handed 310
Helix 50	50	G	122	134	Right-handed alpha
Helix 51	51	G	134	140	Right-handed alpha
Helix 52	52	G	152	161	Right-handed alpha
Helix 53	53	G	163	167	Right-handed 310
Helix 54	54	G	182	188	Right-handed alpha
Helix 55	55	G	224	242	Right-handed alpha
Helix 56	56	G	262	268	Right-handed alpha
Helix 57	57	H	104	107	Right-handed 310
Helix 58	58	H	122	134	Right-handed alpha
Helix 59	59	H	135	140	Right-handed alpha
Helix 60	60	H	152	161	Right-handed alpha
Helix 61	61	H	163	167	Right-handed 310
Helix 62	62	H	182	188	Right-handed alpha
Helix 63	63	H	224	242	Right-handed alpha
Helix 64	64	H	263	268	Right-handed alpha
Helix 65	65	I	104	107	Right-handed 310
Helix 66	66	I	122	134	Right-handed alpha
Helix 67	67	I	134	140	Right-handed alpha
Helix 68	68	I	152	161	Right-handed alpha
Helix 69	69	I	163	167	Right-handed 310
Helix 70	70	I	182	188	Right-handed alpha
Helix 71	71	I	224	242	Right-handed alpha
Helix 72	72	I	262	268	Right-handed alpha
Helix 73	73	J	104	107	Right-handed 310
Helix 74	74	J	122	134	Right-handed alpha
Helix 75	75	J	134	140	Right-handed alpha
Helix 76	76	J	152	161	Right-handed alpha
Helix 77	77	J	163	167	Right-handed 310
Helix 78	78	J	182	188	Right-handed alpha
Helix 79	79	J	224	241	Right-handed alpha
Helix 80	80	J	263	268	Right-handed alpha

There are 13 sheets in PDB entry 2PN8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	176	178	anti-parallel
Strand 4	A	143	149	parallel
Strand 5	A	110	115	parallel
Strand 6	A	200	205	anti-parallel
Strand 7	A	211	217	anti-parallel
Strand 8	B	211	217	anti-parallel
Strand 9	B	200	205	anti-parallel
Strand 10	B	110	115	anti-parallel
Strand 11	B	143	149	parallel
Strand 12	B	176	178	parallel
Strand 13	B	89	94	anti-parallel
Strand 14	B	97	102	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	197	198	anti-parallel

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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	89	94	anti-parallel
Strand 3	C	176	178	anti-parallel
Strand 4	C	143	149	parallel
Strand 5	C	110	115	parallel
Strand 6	C	200	205	anti-parallel
Strand 7	C	211	217	anti-parallel
Strand 8	D	211	217	anti-parallel
Strand 9	D	200	205	anti-parallel
Strand 10	D	110	115	anti-parallel
Strand 11	D	143	149	parallel
Strand 12	D	176	178	parallel
Strand 13	D	89	94	anti-parallel
Strand 14	D	97	102	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	197	198	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	197	198	anti-parallel

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There are 14 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	102	first strand
Strand 2	E	89	94	anti-parallel
Strand 3	E	176	178	anti-parallel
Strand 4	E	143	149	parallel
Strand 5	E	110	115	parallel
Strand 6	E	200	205	anti-parallel
Strand 7	E	211	217	anti-parallel
Strand 8	F	211	217	anti-parallel
Strand 9	F	200	205	anti-parallel
Strand 10	F	110	115	anti-parallel
Strand 11	F	143	149	parallel
Strand 12	F	176	178	parallel
Strand 13	F	89	94	anti-parallel
Strand 14	F	97	102	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	192	first strand
Strand 2	E	197	198	anti-parallel

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There are 14 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	102	first strand
Strand 2	G	89	94	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	143	149	parallel
Strand 5	G	110	115	parallel
Strand 6	G	200	205	anti-parallel
Strand 7	G	211	217	anti-parallel
Strand 8	H	211	217	anti-parallel
Strand 9	H	200	205	anti-parallel
Strand 10	H	110	115	anti-parallel
Strand 11	H	143	149	parallel
Strand 12	H	176	178	parallel
Strand 13	H	89	94	anti-parallel
Strand 14	H	97	102	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	192	first strand
Strand 2	G	197	198	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	191	192	first strand
Strand 2	H	197	198	anti-parallel

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There are 14 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	97	102	first strand
Strand 2	I	89	94	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	143	149	parallel
Strand 5	I	110	115	parallel
Strand 6	I	200	205	anti-parallel
Strand 7	I	211	217	anti-parallel
Strand 8	J	211	217	anti-parallel
Strand 9	J	200	205	anti-parallel
Strand 10	J	110	115	anti-parallel
Strand 11	J	143	149	parallel
Strand 12	J	176	178	parallel
Strand 13	J	89	94	anti-parallel
Strand 14	J	97	102	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	191	192	first strand
Strand 2	I	197	198	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	191	192	first strand
Strand 2	J	197	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2PN8

Analysis of interatomic Contacts of Structural Units in PDB entry:
2PN8