Analysis of interatomic Contacts of Structural Units in PDB entry:
2PNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PNF entry

There are 2 chains in PDB entry 2PNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 248
B
 MET 1PHE 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2PNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
40 56Right-handed alpha
Helix 3
3
A
68 83Right-handed alpha
Helix 4
4
A
100 104Right-handed 310
Helix 5
5
A
105 117Right-handed alpha
Helix 6
6
A
117 128Right-handed alpha
Helix 7
7
A
128 135Right-handed alpha
Helix 8
8
A
144 150Right-handed alpha
Helix 9
9
A
154 176Right-handed alpha
Helix 10
10
A
192 198Right-handed 310
Helix 11
11
A
199 209Right-handed alpha
Helix 12
12
A
217 230Right-handed alpha
Helix 13
13
A
231 234Right-handed 310
Helix 14
14
B
17 30Right-handed alpha
Helix 15
15
B
40 56Right-handed alpha
Helix 16
16
B
68 81Right-handed alpha
Helix 17
17
B
100 104Right-handed 310
Helix 18
18
B
105 117Right-handed alpha
Helix 19
19
B
117 128Right-handed alpha
Helix 20
20
B
128 135Right-handed alpha
Helix 21
21
B
144 150Right-handed alpha
Helix 22
22
B
154 176Right-handed alpha
Helix 23
23
B
192 198Right-handed 310
Helix 24
24
B
199 209Right-handed alpha
Helix 25
25
B
217 230Right-handed alpha
Helix 26
26
B
231 234Right-handed 310
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There are 2 sheets in PDB entry 2PNF. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
33 38parallel
Strand 3
A
9 12parallel
Strand 4
A
88 91parallel
Strand 5
A
137 142parallel
Strand 6
A
180 187parallel
Strand 7
A
240 243parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
33 38parallel
Strand 3
B
9 12parallel
Strand 4
B
88 91parallel
Strand 5
B
137 142parallel
Strand 6
B
180 187parallel
Strand 7
B
240 243parallel
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