Analysis of interatomic Contacts of Structural Units in PDB entry:
2POF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2POF entry

There are 2 chains in PDB entry 2POF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 31LEU 250
B
 SER 31LEU 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 2POF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 41Right-handed alpha
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
89 94Right-handed 310
Helix 4
4
A
99 107Right-handed alpha
Helix 5
5
A
108 116Right-handed alpha
Helix 6
6
A
120 122Right-handed 310
Helix 7
7
A
130 134Right-handed 310
Helix 8
8
A
147 156Right-handed alpha
Helix 9
9
A
157 161Right-handed 310
Helix 10
10
A
183 190Right-handed alpha
Helix 11
11
A
191 200Right-handed alpha
Helix 12
12
A
206 208Right-handed 310
Helix 13
13
A
238 243Right-handed 310
Helix 14
14
B
32 41Right-handed alpha
Helix 15
15
B
41 50Right-handed alpha
Helix 16
16
B
89 94Right-handed 310
Helix 17
17
B
99 107Right-handed alpha
Helix 18
18
B
108 116Right-handed alpha
Helix 19
19
B
120 122Right-handed 310
Helix 20
20
B
130 134Right-handed 310
Helix 21
21
B
147 156Right-handed alpha
Helix 22
22
B
183 190Right-handed alpha
Helix 23
23
B
191 200Right-handed alpha
Helix 24
24
B
202 208Right-handed 310
Helix 25
25
B
238 243Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 2POF. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
76 80anti-parallel
Strand 4
A
141 145anti-parallel
Strand 5
A
124 128anti-parallel
Strand 6
A
210 216anti-parallel
Strand 7
A
222 228anti-parallel
Strand 8
A
178 182anti-parallel
Strand 9
A
166 167anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
64 68anti-parallel
Strand 3
B
76 80anti-parallel
Strand 4
B
141 145anti-parallel
Strand 5
B
124 128anti-parallel
Strand 6
B
210 216anti-parallel
Strand 7
B
222 228anti-parallel
Strand 8
B
178 182anti-parallel
Strand 9
B
166 167anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il