Analysis of interatomic Contacts of Structural Units in PDB entry:
2POM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2POM entry

There is 1 chain in PDB entry 2POM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16GLY 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2POM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed 310
Helix 2
2
A
74 89Right-handed alpha
Helix 3
3
A
98 135Right-handed alpha
Helix 4
4
A
140 144Right-handed 310
Helix 5
5
A
145 163Right-handed alpha
Helix 6
6
A
211 221Right-handed alpha
Helix 7
7
A
224 232Right-handed alpha
Helix 8
8
A
245 251Right-handed alpha
Helix 9
9
A
255 259Right-handed 310
Helix 10
10
A
289 301Right-handed alpha
Helix 11
11
A
304 320Right-handed alpha
Helix 12
12
A
322 344Right-handed alpha
Helix 13
13
A
348 352Right-handed 310
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There are 4 sheets in PDB entry 2POM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
358 364anti-parallel
Strand 3
A
283 288anti-parallel
Strand 4
A
187 194anti-parallel
Strand 5
A
197 202anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
354 355anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
165 174anti-parallel
Strand 4
A
243 244anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 57first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
165 174anti-parallel
Strand 4
A
177 183anti-parallel
Strand 5
A
271 277anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il