Analysis of interatomic Contacts of Structural Units in PDB entry:
2POY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2POY entry

There are 9 chains in PDB entry 2POY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18VAL 186
B
 LEU 14VAL 186
C
 GLY 18VAL 186
T
 VAL 9VAL 9
T
 ALA 11ALA 11
U
 VAL 9VAL 9
U
 ALA 11ALA 11
V
 VAL 9VAL 9
V
 ALA 11ALA 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2POY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
142 146Right-handed 310
Helix 3
3
A
158 168Right-handed alpha
Helix 4
4
B
45 58Right-handed alpha
Helix 5
5
B
142 146Right-handed 310
Helix 6
6
B
158 167Right-handed alpha
Helix 7
7
C
45 58Right-handed alpha
Helix 8
8
C
142 146Right-handed 310
Helix 9
9
C
158 167Right-handed alpha
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There are 6 sheets in PDB entry 2POY. Click on sheet of interest to get list of strands forming it: AA, BA, BB, BC, BD, CA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
84 87anti-parallel
Strand 3
A
135 138anti-parallel
Strand 4
A
120 123anti-parallel
Strand 5
A
151 157anti-parallel
Strand 6
A
31 40anti-parallel
Strand 7
A
21 28anti-parallel
Strand 8
A
179 185anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
19 28anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
135 138anti-parallel
Strand 4
B
120 123anti-parallel
Strand 5
B
151 157anti-parallel
Strand 6
B
31 40anti-parallel
Strand 7
B
19 28anti-parallel
Strand 8
B
179 185anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
135 138anti-parallel
Strand 4
B
120 123anti-parallel
Strand 5
B
151 157anti-parallel
Strand 6
B
31 40anti-parallel
Strand 7
B
19 28anti-parallel
Strand 8
B
15 16anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 185first strand
Strand 2
B
19 28anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 80first strand
Strand 2
C
84 87anti-parallel
Strand 3
C
135 138anti-parallel
Strand 4
C
120 123anti-parallel
Strand 5
C
151 157anti-parallel
Strand 6
C
31 40anti-parallel
Strand 7
C
21 28anti-parallel
Strand 8
C
179 185anti-parallel
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