Analysis of interatomic Contacts of Structural Units in PDB entry:
2PPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PPV entry

There is 1 chain in PDB entry 2PPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 2PRO 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2PPV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
39 49Right-handed alpha
Helix 3
3
A
54 64Right-handed alpha
Helix 4
4
A
69 76Right-handed alpha
Helix 5
5
A
83 87Right-handed 310
Helix 6
6
A
88 102Right-handed alpha
Helix 7
7
A
103 115Right-handed alpha
Helix 8
8
A
167 177Right-handed alpha
Helix 9
9
A
191 196Right-handed alpha
Helix 10
10
A
197 207Right-handed alpha
Helix 11
11
A
228 241Right-handed alpha
Helix 12
12
A
256 266Right-handed alpha
Helix 13
13
A
274 281Right-handed alpha
Helix 14
14
A
303 319Right-handed alpha
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There are 3 sheets in PDB entry 2PPV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 123first strand
Strand 2
A
27 33parallel
Strand 3
A
4 10parallel
Strand 4
A
179 182parallel
Strand 5
A
211 214parallel
Strand 6
A
247 249parallel
Strand 7
A
284 286parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
140 142first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
154 160anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
292 294first strand
Strand 2
A
300 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il