Analysis of interatomic Contacts of Structural Units in PDB entry:
2PQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PQ6 entry

There is 1 chain in PDB entry 2PQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8LYS 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 2PQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 35Right-handed alpha
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
87 96Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
129 138Right-handed alpha
Helix 6
6
A
149 157Right-handed alpha
Helix 7
7
A
158 165Right-handed alpha
Helix 8
8
A
172 177Right-handed 310
Helix 9
9
A
179 183Right-handed 310
Helix 10
10
A
195 199Right-handed 310
Helix 11
11
A
200 204Right-handed 310
Helix 12
12
A
210 222Right-handed alpha
Helix 13
13
A
234 237Right-handed 310
Helix 14
14
A
238 247Right-handed alpha
Helix 15
15
A
257 264Right-handed alpha
Helix 16
16
A
267 272Right-handed 310
Helix 17
17
A
283 290Right-handed alpha
Helix 18
18
A
309 323Right-handed alpha
Helix 19
19
A
332 336Right-handed 310
Helix 20
20
A
339 343Right-handed 310
Helix 21
21
A
344 352Right-handed alpha
Helix 22
22
A
362 368Right-handed alpha
Helix 23
23
A
380 391Right-handed alpha
Helix 24
24
A
402 413Right-handed alpha
Helix 25
25
A
425 438Right-handed alpha
Helix 26
26
A
439 460Right-handed alpha
Helix 27
27
A
464 477Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2PQ6. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
38 44parallel
Strand 3
A
10 14parallel
Strand 4
A
121 125parallel
Strand 5
A
142 146parallel
Strand 6
A
229 231parallel
Strand 7
A
252 254parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
326 330parallel
Strand 3
A
297 301parallel
Strand 4
A
372 377parallel
Strand 5
A
394 396parallel
Strand 6
A
417 419parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il