Analysis of interatomic Contacts of Structural Units in PDB entry:
2PS1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PS1 entry

There are 2 chains in PDB entry 2PS1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2ALA 225
B
 ILE 2ALA 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2PS1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 18Right-handed alpha
Helix 2
2
A
40 43Right-handed 310
Helix 3
3
A
45 64Right-handed alpha
Helix 4
4
A
76 92Right-handed alpha
Helix 5
5
A
137 150Right-handed alpha
Helix 6
6
A
176 186Right-handed alpha
Helix 7
7
A
195 203Right-handed alpha
Helix 8
8
A
204 206Right-handed 310
Helix 9
9
A
209 222Right-handed alpha
Helix 10
10
B
5 18Right-handed alpha
Helix 11
11
B
40 43Right-handed 310
Helix 12
12
B
45 64Right-handed alpha
Helix 13
13
B
76 92Right-handed alpha
Helix 14
14
B
93 97Right-handed 310
Helix 15
15
B
137 150Right-handed alpha
Helix 16
16
B
176 186Right-handed alpha
Helix 17
17
B
195 203Right-handed alpha
Helix 18
18
B
204 206Right-handed 310
Helix 19
19
B
207 222Right-handed alpha
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There are 4 sheets in PDB entry 2PS1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 27first strand
Strand 2
A
33 38anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
100 109anti-parallel
Strand 3
A
69 72parallel
Strand 4
A
126 134parallel
Strand 5
A
153 162parallel
Strand 6
A
189 194parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 27first strand
Strand 2
B
33 38anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 119first strand
Strand 2
B
100 109anti-parallel
Strand 3
B
69 72parallel
Strand 4
B
126 134parallel
Strand 5
B
153 162parallel
Strand 6
B
189 194parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il