Analysis of interatomic Contacts of Structural Units in PDB entry:
2PSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PSM entry

There are 4 chains in PDB entry 2PSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2SER 114
F
 THR 3LEU 70
B
 SER -2SER 114
C
 THR 3ALA 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 2PSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-2 16Right-handed alpha
Helix 2
2
A
17 19Right-handed 310
Helix 3
3
A
32 34Right-handed 310
Helix 4
4
A
35 54Right-handed alpha
Helix 5
5
A
56 77Right-handed alpha
Helix 6
6
A
87 91Right-handed 310
Helix 7
7
A
96 113Right-handed alpha
Helix 8
8
B
-2 16Right-handed alpha
Helix 9
9
B
17 19Right-handed 310
Helix 10
10
B
32 34Right-handed 310
Helix 11
11
B
35 54Right-handed alpha
Helix 12
12
B
56 77Right-handed alpha
Helix 13
13
B
87 91Right-handed 310
Helix 14
14
B
96 113Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 2PSM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
92 95anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
13 14first strand
Strand 2
F
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
25 27first strand
Strand 2
F
43 48anti-parallel
Strand 3
F
55 57anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
34 36first strand
Strand 2
F
64 66anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
93 95anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 27first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
55 57anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 36first strand
Strand 2
C
64 66anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il