Analysis of interatomic Contacts of Structural Units in PDB entry:
2PU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PU5 entry

There are 2 chains in PDB entry 2PU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 286
B
 LEU 4ALA 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2PU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 8Right-handed 310
Helix 2
2
A
47 53Right-handed alpha
Helix 3
3
A
55 62Right-handed alpha
Helix 4
4
A
85 102Right-handed alpha
Helix 5
5
A
112 125Right-handed alpha
Helix 6
6
A
150 162Right-handed alpha
Helix 7
7
A
164 175Right-handed alpha
Helix 8
8
A
178 182Right-handed 310
Helix 9
9
A
183 197Right-handed alpha
Helix 10
10
A
197 211Right-handed alpha
Helix 11
11
A
212 217Right-handed 310
Helix 12
12
A
218 225Right-handed 310
Helix 13
13
A
242 252Right-handed alpha
Helix 14
14
A
266 271Right-handed alpha
Helix 15
15
A
271 286Right-handed alpha
Helix 16
16
B
47 53Right-handed alpha
Helix 17
17
B
55 61Right-handed alpha
Helix 18
18
B
85 102Right-handed alpha
Helix 19
19
B
112 125Right-handed alpha
Helix 20
20
B
150 162Right-handed alpha
Helix 21
21
B
165 176Right-handed alpha
Helix 22
22
B
178 182Right-handed 310
Helix 23
23
B
183 196Right-handed alpha
Helix 24
24
B
197 211Right-handed alpha
Helix 25
25
B
212 217Right-handed 310
Helix 26
26
B
218 225Right-handed 310
Helix 27
27
B
242 252Right-handed alpha
Helix 28
28
B
266 271Right-handed alpha
Helix 29
29
B
271 286Right-handed alpha
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There is 1 sheet ( A) in PDB entry 2PU5.

There are 16 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
34 39parallel
Strand 5
A
106 111parallel
Strand 6
A
129 135parallel
Strand 7
A
229 234parallel
Strand 8
A
255 260parallel
Strand 9
B
254 260anti-parallel
Strand 10
B
228 234parallel
Strand 11
B
129 135parallel
Strand 12
B
106 111parallel
Strand 13
B
35 39parallel
Strand 14
B
65 69parallel
Strand 15
B
23 30anti-parallel
Strand 16
B
10 15anti-parallel
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