Analysis of interatomic Contacts of Structural Units in PDB entry:
2PV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PV0 entry

There are 3 chains in PDB entry 2PV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 34THR 380
A
 GLY 34THR 380
C
 GLY 34THR 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2PV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
34 44Right-handed alpha
Helix 2
2
B
48 52Right-handed 310
Helix 3
3
B
73 82Right-handed alpha
Helix 4
4
B
118 126Right-handed alpha
Helix 5
5
B
129 137Right-handed alpha
Helix 6
6
B
159 172Right-handed alpha
Helix 7
7
B
183 187Right-handed 310
Helix 8
8
B
199 206Right-handed alpha
Helix 9
9
B
228 235Right-handed alpha
Helix 10
10
B
256 271Right-handed alpha
Helix 11
11
B
291 302Right-handed alpha
Helix 12
12
B
339 351Right-handed alpha
Helix 13
13
B
364 374Right-handed 310
Helix 14
14
A
37 44Right-handed alpha
Helix 15
15
A
48 52Right-handed 310
Helix 16
16
A
74 82Right-handed alpha
Helix 17
17
A
118 126Right-handed alpha
Helix 18
18
A
129 137Right-handed alpha
Helix 19
19
A
159 172Right-handed alpha
Helix 20
20
A
183 187Right-handed 310
Helix 21
21
A
199 206Right-handed alpha
Helix 22
22
A
228 235Right-handed alpha
Helix 23
23
A
255 271Right-handed alpha
Helix 24
24
A
291 302Right-handed alpha
Helix 25
25
A
339 352Right-handed alpha
Helix 26
26
A
360 365Right-handed alpha
Helix 27
27
A
366 374Right-handed 310
Helix 28
28
C
37 45Right-handed alpha
Helix 29
29
C
48 52Right-handed 310
Helix 30
30
C
73 83Right-handed alpha
Helix 31
31
C
119 126Right-handed alpha
Helix 32
32
C
130 136Right-handed alpha
Helix 33
33
C
142 146Right-handed 310
Helix 34
34
C
159 172Right-handed alpha
Helix 35
35
C
228 233Right-handed alpha
Helix 36
36
C
255 269Right-handed alpha
Helix 37
37
C
292 301Right-handed alpha
Helix 38
38
C
339 349Right-handed alpha
Helix 39
39
C
360 366Right-handed alpha
Helix 40
40
C
369 373Right-handed 310
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There are 10 sheets in PDB entry 2PV0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
116 117anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
154 155anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
192 195parallel
Strand 3
B
240 244parallel
Strand 4
B
281 286parallel
Strand 5
B
320 325anti-parallel
Strand 6
B
308 310anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
71 73anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
116 117anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
192 195parallel
Strand 3
A
240 244parallel
Strand 4
A
281 286parallel
Strand 5
A
316 325anti-parallel
Strand 6
A
307 313anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
71 72anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
116 117anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 221first strand
Strand 2
C
192 195parallel
Strand 3
C
240 244parallel
Strand 4
C
281 285parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
307 309first strand
Strand 2
C
321 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il